| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,093,686 | 0 | T | C | 100.0% | 125.7 / NA | 37 | V130A (GTA→GCA) | ycdT | predicted diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/15); total (22/15) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGTATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAATGACTTTG > W3110S.gb/1093622‑1093750 | cAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTg > 1:3623939/1‑69 (MQ=255)cAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTg < 1:1819847/69‑1 (MQ=255) gCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTg > 1:1561662/1‑60 (MQ=255) gCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGtt > 1:198933/1‑69 (MQ=255) cTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGt > 1:2115903/1‑63 (MQ=255) cTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTg > 1:2008984/1‑68 (MQ=255) tattatTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGaa > 1:506471/1‑69 (MQ=255) attTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAac > 1:3599689/1‑68 (MQ=255) attTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAac > 1:1899606/1‑68 (MQ=255) tGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa < 1:2041386/69‑1 (MQ=255) tGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa < 1:1735333/69‑1 (MQ=255) gAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATaa > 1:285418/1‑39 (MQ=255) gAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATaa > 1:2396962/1‑39 (MQ=255) gAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATaa > 1:564595/1‑39 (MQ=255) gAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAattt > 1:392303/1‑69 (MQ=255) gCATATTAATATTTCTGGCATTGGTGAATAAAGtt < 1:1286146/35‑1 (MQ=255) atTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaa < 1:1479014/69‑1 (MQ=255) atTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaa < 1:1029143/69‑1 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGaaaa < 1:1322993/38‑1 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGaaaa < 1:1310312/38‑1 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa > 1:570551/1‑43 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa > 1:3557202/1‑43 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa > 1:2995078/1‑43 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa > 1:2128800/1‑43 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa > 1:2558648/1‑43 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaaa > 1:1675379/1‑69 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaaa > 1:491253/1‑69 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaaa > 1:1310417/1‑69 (MQ=255) ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaaa > 1:1302294/1‑69 (MQ=255) atTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa < 1:3283674/38‑1 (MQ=255) atTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa < 1:1938347/38‑1 (MQ=255) atTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaa < 1:1412935/38‑1 (MQ=255) tttCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGAGCAATTTATTTTCCAAAAAAATGACt > 1:540891/1‑69 (MQ=255) tCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAATGACttt < 1:2766753/69‑1 (MQ=255) tCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAATGACtt < 1:347889/68‑1 (MQ=255) cTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAATGACttt < 1:896943/68‑1 (MQ=255) tGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAATGACTTtg < 1:2527025/68‑1 (MQ=255) | CAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGTATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAATGACTTTG > W3110S.gb/1093622‑1093750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |