Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,400,571 G→A 14.6% L224L (CTG→TTG)  fnr ← DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,400,5710GA14.6% 106.7 / 10.1 41L224L (CTG→TTG) fnrDNA‑binding transcriptional dual regulator, global regulator of anaerobic growth
Reads supporting (aligned to +/- strand):  ref base G (17/18);  new base A (2/4);  total (19/22)
Fisher's exact test for biased strand distribution p-value = 6.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

CGTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTA  >  W3110S.gb/1400503‑1400638
                                                                    |                                                                   
cgTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAg                                                                     <  1:981172/69‑1 (MQ=255)
cgTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAg                                                                     <  1:764486/69‑1 (MQ=255)
cgTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAg                                                                     <  1:667937/69‑1 (MQ=255)
cgTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAg                                                                     <  1:1017491/69‑1 (MQ=255)
cgTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAg                                                                     <  1:2681092/69‑1 (MQ=255)
   aTGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAACAt                                                                  <  1:3425226/69‑1 (MQ=255)
    tGACCAGCAAGCTGGGCCAGCTCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAACATg                                                                 >  1:1322865/1‑69 (MQ=255)
    tGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAACATg                                                                 >  1:1973793/1‑69 (MQ=255)
          gCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCtt                                                           <  1:2997922/69‑1 (MQ=255)
                 gggCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGa                                                    <  1:3351645/69‑1 (MQ=255)
                    ccAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGc                                                 <  1:902/69‑1 (MQ=255)
                     cAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCg                                                <  1:2137654/69‑1 (MQ=255)
                         gcgtCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGAccc                                            <  1:502737/66‑1 (MQ=255)
                         gcATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGAccc                                            <  1:1122667/69‑1 (MQ=255)
                          cATCGTTATTTTCGATTGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGa                                                    <  1:2305002/60‑1 (MQ=255)
                            tCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGa                                                    >  1:2735165/1‑58 (MQ=255)
                             cGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAACATGCCGCTTTTCTGGAAGCGACCcagca                                        <  1:1019764/69‑1 (MQ=255)
                             cGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAACATGCCGCTTTTCTGGAAGCGACCcagca                                        <  1:82637/69‑1 (MQ=255)
                              gTTATTTTCGATGGTGATGTATTTACCTTTGATTGCCAGCATGCCGCTTTTCTGGAAGCGACCcagcag                                       >  1:195803/1‑69 (MQ=255)
                              gTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGc                                                 >  1:784977/1‑59 (MQ=255)
                              gTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGc                                                 <  1:3349043/59‑1 (MQ=255)
                              gTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGc                                                 >  1:2895715/1‑59 (MQ=255)
                              gTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTCGAAGc                                                 >  1:2924672/1‑59 (MQ=255)
                                 aTTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACg                                    >  1:2194248/1‑69 (MQ=255)
                                 aTTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACg                                    >  1:3717395/1‑69 (MQ=255)
                                     tCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCATCAGACGGCt                                 <  1:2097478/68‑1 (MQ=255)
                                             gATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACg                                    >  1:1505165/1‑57 (MQ=255)
                                             gATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTg                                >  1:350076/1‑61 (MQ=255)
                                             gATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTg                                >  1:1182696/1‑61 (MQ=255)
                                              aTGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCt                       <  1:2875293/69‑1 (MQ=255)
                                                 tATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCcagca                                        <  1:1490445/49‑1 (MQ=255)
                                                 tATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCcagca                                        <  1:1083683/49‑1 (MQ=255)
                                                 tATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTAcc                    >  1:2986731/1‑69 (MQ=255)
                                                 tATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTAcc                    >  1:2185550/1‑69 (MQ=255)
                                                  aTTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCcagca                                        >  1:48284/1‑48 (MQ=255)
                                                  aTTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCcagca                                        <  1:2634674/48‑1 (MQ=255)
                                                   tttACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTAcc                    >  1:1783347/1‑67 (MQ=255)
                                                   tttACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGt                  <  1:683864/69‑1 (MQ=255)
                                                     tACCTTTGACTGCCAGCATTCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGt                  <  1:2291304/67‑1 (MQ=255)
                                                     tACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGt                  <  1:96618/67‑1 (MQ=255)
                                                         tttGACTGCCAACATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGc             <  1:1772259/68‑1 (MQ=255)
                                                             aCTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCa          <  1:3010540/67‑1 (MQ=255)
                                                               tGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTATACCGTCAGGCCCAGAt       <  1:73185/68‑1 (MQ=255)
                                                                gCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATa      >  1:2612230/1‑68 (MQ=255)
                                                                  cAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGtt   >  1:1290542/1‑69 (MQ=255)
                                                                   aGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTa  >  1:2330617/1‑69 (MQ=255)
                                                                    |                                                                   
CGTATGACCAGCAAGCTGGGCCAGCGCATCGTTATTTTCGATGGTGATGTATTTACCTTTGACTGCCAGCATGCCGCTTTTCTGGAAGCGACCCAGCAGACGGCTGATGGTTTCTACCGTCAGGCCCAGATAGTTA  >  W3110S.gb/1400503‑1400638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: