| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 19 (0.650) | 25 (0.890) +TC |
16/96 | NT | 73.3% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314515‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > W3110S.gb/3932930‑3932993 || TGTGAGTCACCTCTGA‑‑GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCC > 1:2739487/1‑71 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATC > 1:1712324/1‑70 CACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGtg < 1:1278587/70‑3 CCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGC < 1:2203417/69‑1 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCC > 1:201850/1‑62 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAA < 1:2173271/71‑1 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGG > 1:1495741/1‑71 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCC < 1:2283854/50‑1 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCC < 1:2445501/45‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAA < 1:999171/57‑1 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG > 1:2319590/1‑70 TAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAA > 1:1430475/1‑56 TCCACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAA < 1:795395/70‑1 CACTATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC < 1:1604133/71‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2105182/1‑71 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAA < 1:2114013/65‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:907612/57‑1 TATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAA < 1:1660310/40‑1 ATTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:2187700/1‑70 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:479394/1‑71 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTAT < 1:2223351/70‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAA < 1:2212253/63‑1 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA > 1:2465046/1‑50 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA > 1:478365/1‑50 TTGCTGGGTAAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA > 1:976255/1‑50 AAGATCAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT < 1:1491270/70‑1 CAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > 1:70502/1‑52 || TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314515‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > W3110S.gb/3932930‑3932993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |