New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 315707	NA (NA)	46 (1.570)	24/100	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme

CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315638‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979                                                                                                                                             CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:1615038/71‑1  CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:1737483/1‑70  CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:1567475/70‑1         CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCC                                                               >  1:821800/1‑70              CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:1315814/58‑1                   TGAAAACAAGACCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:152436/1‑53                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:189533/70‑1                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:1671446/70‑1                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAC                                                                     >  1:52613/1‑54                   TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:2631468/1‑53                     AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   <  1:2355308/70‑1                     AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGA                                                   <  1:909553/70‑1                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCC                                                               <  1:1635100/56‑1                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:536857/1‑49                       AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      >  1:34499/1‑49                        ACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGT                                               >  1:784593/1‑71                          AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCT                                             >  1:1778244/1‑71                            GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:840705/44‑1                            GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:1439587/44‑1                            GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAA                                                                      <  1:1745782/44‑1                               CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:494989/58‑1                                        GGCCTGTGGCCTTATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCT                               <  1:2787733/71‑1                                         GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:2695661/63‑1                                         GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:2134217/63‑1                                         GCCTGTGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      <  1:976334/63‑1                                              TGTCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:704422/43‑1                                                TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:1401764/1‑71                                                TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:1257057/64‑1                                                TCCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:2383562/41‑1                                                 CCATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAAC                                                     <  1:975517/40‑1                                                  CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATA                     >  1:221165/1‑71                                                  CATATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATA                     >  1:1484085/1‑71                                                    TATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTG                                            <  1:2394083/46‑1                                                     ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:2686837/1‑61                                                     ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACA                            >  1:1508687/1‑61                                                     ATTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGG                                           >  1:2653850/1‑46                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA                 <  1:2088094/71‑1                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:787808/1‑69                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:1950025/1‑69                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:454775/1‑69                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:660538/1‑69                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:1481632/1‑69                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA                                         >  1:2112986/1‑47                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA                                         >  1:2239069/1‑47                                                      TTACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGA                                          >  1:1037390/1‑46                                                        ACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAATGTGTCAGCTACATACCATACA                   >  1:1214075/1‑67                                                        ACGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACA                   >  1:2647625/1‑67                                                         CGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGA               <  1:1835636/70‑1                                                         CGTGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGA               <  1:1761627/70‑1                                                           TGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA                                         >  1:1002786/1‑42                                                           TGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAA                                         >  1:179377/1‑42                                                           TGGGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGA                                          >  1:1654704/1‑41                                                             GGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTG          <  1:766862/71‑1                                                             GGTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATT           <  1:2557418/70‑1                                                              GTAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGG                                           <  1:2338012/37‑1                                                               TAGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTC                                   <  1:1663731/44‑1                                                                AGGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGG                                       >  1:2595088/1‑39                                                                 GGATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      >  1:1071781/1‑71                                                                  GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCATCTACATACCATACAAAGATAT            <  1:1286569/64‑1                                                                  GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAA                 <  1:526562/59‑1                                                                  GATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTA                              <  1:10123/46‑1                                                                   ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    <  1:164981/71‑1                                                                   ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    <  1:768575/71‑1                                                                   ATCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    <  1:1904617/71‑1                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:352190/1‑70                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:1257054/1‑70                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTG    >  1:1146116/1‑70                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGG      >  1:2755475/1‑68                                                                    TCAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATA             >  1:317023/1‑61                                                                     CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  1:1761888/1‑71                                                                     CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  1:2060058/1‑71                                                                     CAACTGGCCCAAGTGGTAACGATGGTCTGGAAGGT                                      >  1:2499818/1‑35                                                                      AACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  <  1:441299/70‑1                                                                      AACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  <  1:1881251/70‑1                                                                      AACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCA                       >  1:1785776/1‑49                                                                                                                                             CCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/315638‑315707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA  >  W3110S.gb/576911‑576979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.