Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 1,301,041 Δ1,336 bp 100% insCinsD insC, insD

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 1301041–1302370 1302376 7–1336 51 [0] [0] 50 insC–insD insC,insD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 13010400 (0.000)31 (1.230) 14/86 NT 100% intergenic (+218/‑90) ychE/insC predicted inner membrane protein/IS2 element protein
?W3110S.gb 1302377 = 0 (0.000)intergenic (+19/‑519) insD/oppA IS2 element protein/oligopeptide transporter subunit

CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1300970‑1301040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  W3110S.gb/1302377‑1302446
                                                                                                                                             
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATT                                                                         >  1:926252/1‑70
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATT                                                                         <  1:327943/70‑1
      ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA                                                                    <  1:396155/69‑1
      ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA                                                                    <  1:341616/69‑1
      ACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAA                                                                    <  1:2498466/69‑1
       CCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGAT                                                                            <  1:1227111/60‑1
         ATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                               >  1:1531414/1‑71
            ATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTG                                                            >  1:2786780/1‑71
            ATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTG                                                            >  1:1817583/1‑71
               TTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCT                                                         >  1:1442777/1‑71
               TTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCT                                                         >  1:1505912/1‑71
                TATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCA                                                               >  1:2194069/1‑64
                 ATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAACTGATAT                                                                          <  1:1462773/52‑1
                           CATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:1437546/46‑1
                           CATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGA                                                                             <  1:2014499/39‑1
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAG                                           >  1:2279778/1‑71
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAG                                           >  1:227662/1‑71
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTT                                                       >  1:2748625/1‑59
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGC                                                           >  1:2803625/1‑55
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC                                                                 <  1:862084/49‑1
                             TCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC                                                                 <  1:1599284/49‑1
                              CATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC                                                                 <  1:1451222/48‑1
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG                                         >  1:675162/1‑71
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG                                         >  1:2608947/1‑71
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG                                         >  1:1658180/1‑71
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAG                                           >  1:2078272/1‑69
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA                                                                        >  1:127787/1‑40
                               ATAATCCTGGGCTTGCTGAAGAATAATTGAAATGAT                                                                            <  1:276754/36‑1
                                  ATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGC                                        >  1:313725/1‑69
                                     CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC                                                                 >  1:2040938/1‑41
                                     CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC                                                                 <  1:1959410/41‑1
                                     CTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTC                                                                 >  1:1858413/1‑41
                                     CTGGGCTTGCTGAAGAATAATTGAAATGATATTATT                                                                      <  1:1104538/36‑1
                                       GGGCTTGCTGAAGATTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA                                  >  1:1549106/1‑70
                                       GGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAA                                 >  1:795411/1‑71
                                       GGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAA                                 >  1:1932197/1‑71
                                          CTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAA                              >  1:124926/1‑71
                                          CTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAAT                                <  1:2704903/69‑1
                                           TTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAAT                                <  1:468332/68‑1
                                                      TAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAAT                                <  1:484290/57‑1
                                                        ATTGAAATTATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATT                <  1:1318818/71‑1
                                                        ATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATT                <  1:1540938/71‑1
                                                          TGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTAT              >  1:2361674/1‑71
                                                              ATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTG          <  1:740092/71‑1
                                                               TGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTA                    <  1:2610672/60‑1
                                                                  TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATT      >  1:201249/1‑71
                                                                  TATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATA                                  <  1:189297/43‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT     <  1:1498835/70‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTT     >  1:2305269/1‑70
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAAT                 <  1:928138/58‑1
                                                                    TTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTA                    <  1:925272/55‑1
                                                                     TATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAA                              >  1:647303/1‑44
                                                                      ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  1:964576/1‑71
                                                                      ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCA   >  1:2131479/1‑70
                                                                      ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCA   >  1:2134767/1‑70
                                                                      ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAA                          >  1:1767188/1‑47
                                                                      ATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAA                                    >  1:2385514/1‑37
                                                                                                                                             
CTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/1300970‑1301040
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatattaTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCAC  >  W3110S.gb/1302377‑1302446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.