New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2173564NA (NA)33 (1.150) 21/98 NT 100% pseudogene (307/2041 nt)
pseudogene (307/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?W3110S.gb 3920278 = 0 (0.000)coding (91/213 nt) cspA major cold shock protein

CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173497‑2173564
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA  >  W3110S.gb/3920278‑3920348
                                                                                                                                           
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                        <  1:1931155/69‑1
 TCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGAAGGATCACA                                                                      >  1:343752/1‑70
  CAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACt                                                                    >  1:807452/1‑70
   AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT                                                                   <  1:1776106/71‑1
   AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACAT                                                                   >  1:2294955/1‑71
   AGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACAC                                                                     <  1:936017/69‑1
     TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATC                                                                  <  1:1118644/70‑1
       CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATC                                                                  >  1:752611/1‑68
       CGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA                                                                        <  1:2585248/62‑1
           ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAG                                                           >  1:807527/1‑71
            CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC                                                          >  1:31148/1‑71
            CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGC                                                          <  1:2582894/71‑1
               TTTGAAAACAAGAACCTCGCTTAGGCCTGTATCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCAT                                                       <  1:81088/71‑1
                TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA                                                              >  1:2610119/1‑63
                     AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                 <  1:2354496/71‑1
                       CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                 >  1:1916229/1‑69
                        AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAG                                              >  1:2176178/1‑71
                         AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGT                                             <  1:2243888/71‑1
                         AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATC                                                                  <  1:1509383/50‑1
                                CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTA                                                              >  1:1343351/1‑47
                                      GGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA                                 >  1:633155/1‑70
                                      GGCCTGTGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAA                                 <  1:766432/70‑1
                                            TGTCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTG                          >  1:1500287/1‑71
                                              TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA                                               >  1:920402/1‑48
                                              TCCATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                 >  1:2456738/1‑46
                                                CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAG                                              >  1:722489/1‑47
                                                CATATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGA                                               >  1:531360/1‑46
                                                   ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGG                                                >  1:2480357/1‑42
                                                   ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAG                                                 <  1:1452560/41‑1
                                                   ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                  >  1:466990/1‑40
                                                   ATTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                  >  1:228430/1‑40
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTT                  >  1:2754576/1‑71
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGT                   >  1:851287/1‑70
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTCTCAGCGTT                  >  1:2777583/1‑71
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGC                                     >  1:2603967/1‑52
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAG                                      >  1:734368/1‑51
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCA                                                  >  1:2424084/1‑39
                                                    TTACGTGGGTAGGATCACACATCTTTAGAGCCATCG                                                     >  1:472859/1‑36
                                                      ACGTGGGTAGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTG                 >  1:869986/1‑70
                                                              AGGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTT         >  1:935329/1‑70
                                                               GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTA       >  1:2676356/1‑71
                                                               GGATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTT        >  1:1267770/1‑70
                                                                GATCACACATCTTTTGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC      <  1:2305170/71‑1
                                                                GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC      <  1:629503/71‑1
                                                                GATCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAC      <  1:2582825/71‑1
                                                                  TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA    >  1:1482158/1‑71
                                                                  TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA    >  1:2157182/1‑71
                                                                  TCACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTT                            >  1:2519416/1‑47
                                                                   CACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA    >  1:632091/1‑70
                                                                    ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA  >  1:317351/1‑71
                                                                                                                                           
CTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173497‑2173564
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA  >  W3110S.gb/3920278‑3920348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.