New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2173565NA (NA)23 (0.780) 14/100 NT 100% pseudogene (306/2041 nt)
pseudogene (306/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?W3110S.gb = 3932933 0 (0.000)coding (222/1608 nt) dppA dipeptide transporter

TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173512‑2173565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG  <  W3110S.gb/3932933‑3932866
                                                                                                                          
TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                     <  1:404012/71‑1
         AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATT                                            >  1:1297863/1‑71
           GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA                                          <  1:1613005/71‑1
               CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA                                      <  1:1646737/71‑1
                 CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA                                    >  1:223910/1‑71
                           TGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC                                                       <  1:2695320/42‑1
                             TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG                         >  1:639844/1‑70
                               TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG                      <  1:970458/71‑1
                                   TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                           <  1:1500480/46‑1
                                   TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                           <  1:636845/46‑1
                                   TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                           <  1:1895070/46‑1
                                     TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                 >  1:1335697/1‑70
                                     TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                 >  1:2053903/1‑70
                                     TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                 >  1:1500113/1‑70
                                     TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAAT                                             >  1:541565/1‑42
                                     TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAAT                                             >  1:1342921/1‑42
                                       ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                 >  1:1690186/1‑68
                                       ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                 >  1:2122679/1‑68
                                              TAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA             <  1:1031032/65‑1
                                              TAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA               >  1:2174667/1‑63
                                              TAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA                           >  1:352571/1‑51
                                              TAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA                           >  1:1673309/1‑51
                                               AGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA      >  1:1501644/1‑71
                                                 GATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA             <  1:640612/62‑1
                                                   TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG  >  1:484200/1‑71
                                                   TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGT        <  1:307274/65‑1
                                                   TCACACTTCGGTGGTGCCGATTTTAAATTCAACAGACGGTTATAAAGCGGGACGGAAGAG            >  1:425294/1‑60
                                                     ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA               <  1:1434914/56‑1
                                                     ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA               <  1:2014705/56‑1
                                                     ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA               <  1:1723036/56‑1
                                                                                                                          
TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173512‑2173565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG  <  W3110S.gb/3932933‑3932866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.