| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 0 (0.000) | 14 (0.580) | 11/82 | NT | 100% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 0 (0.000) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4547305‑4547372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGT < W3110S.gb/4547668‑4547599 AAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTT > 1:2655386/1‑71AAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATT < 1:2495832/61‑1AAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATT < 1:1570352/61‑1 GTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT < 1:2143653/68‑1 GTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCATTTT < 1:641833/68‑1 TTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCA > 1:849649/1‑71 TGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTG > 1:2198736/1‑54 TAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAG < 1:2082814/70‑1 ATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGC < 1:1637516/70‑1 ATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGC < 1:2697155/70‑1 ATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAG < 1:621629/69‑1 AAAGTT‑AAAAAAACAAATAAATACAAGAAAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGAC > 1:635867/1‑70 GTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAAC < 1:690194/71‑1 AAAAACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATAGA > 1:1615482/1‑46 AACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATA < 1:2436331/41‑1 AACAAATAAATACAAGACAATTGGGGCCATTTTGACTCATA < 1:1397539/41‑1 CAAATAAATACAAGACAATTGGGGCCATTTTGACTCA > 1:2058860/1‑37 ATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTAT < 1:1296185/71‑1 ATAAATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTAT < 1:495245/71‑1 AATACAAGACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTT < 1:141302/70‑1 GACAATTGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTT < 1:237299/71‑1 TGGGGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTAT > 1:2297210/1‑55 GGGGCCATTTTGACTCATAGAGGATAGCATCGCGGACAAACTTTTTCAGTTTATTTGT > 1:599852/1‑58 GGCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTA < 1:805261/71‑1 GCCATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTGAGTTTATTTGTTGGCTTAATATTCTAT > 1:1836645/1‑71 ATTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGT > 1:1034384/1‑71 AAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4547305‑4547372‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggccaTTTTGACTCATAGAGGAAAGCATCGCGGACAAACTTTTTCAGTTTATTTGTTGGCTTAATATTCTATTGT < W3110S.gb/4547668‑4547599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |