| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 2 (0.070) | 28 (0.990) | 17/96 | NT | 93.6% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018513‑2018653 | tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:303564‑M1/13‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc > 1:849559‑M1/58‑70 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATcc < 1:1778911‑M1/21‑1 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATcc < 1:535144‑M1/21‑1 (MQ=255) acgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATcc < 1:558984‑M1/21‑1 (MQ=255) gatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:1325663‑M1/1‑57 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:1063401‑M1/70‑15 (MQ=255) atatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt < 1:2461427‑M1/70‑15 (MQ=255) atGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaag > 1:2718260‑M1/1‑54 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggt > 1:956085‑M1/1‑51 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggt > 1:856279‑M1/1‑51 (MQ=255) cTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaa > 1:1222379‑M1/1‑51 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGGTCGATCCCACCCTCCATCCTGGCGGCTGTa < 1:431153‑M1/32‑1 (MQ=255) ggCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:2544714‑M1/70‑23 (MQ=255) aggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGt < 1:815474‑M1/36‑1 (MQ=255) gtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct < 1:138739‑M1/38‑1 (MQ=255) ccTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgct < 1:1309493‑M1/50‑10 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgcc < 1:2409963‑M1/43‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATACTGGCGGCTCTaaa < 1:940383‑M1/34‑1 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2189061‑M1/1‑39 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:2745796‑M1/66‑28 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacca < 1:2060015‑M1/66‑28 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:364385‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaac > 1:1655537‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaac > 1:1247349‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaac > 1:390483‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaaggcttgaaccatctg > 1:640705‑M1/1‑38 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:1633624‑M1/13‑1 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctga < 1:2211298‑M1/69‑33 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:1654984‑M1/1‑37 (MQ=255) aaGTTTGAATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:2481044‑M1/1‑37 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGTGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaaga < 1:1220394‑M1/71‑36 (MQ=255) aGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaaga < 1:842239‑M1/71‑36 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCg > 1:2090624‑M1/19‑71 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCg > 1:986449‑M1/19‑71 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:1307687‑M1/50‑23 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:2104166‑M1/61‑40 (MQ=255) cgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccat > 1:1131553‑M1/1‑21 (MQ=255) cgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGcc > 1:1092133‑M1/8‑71 (MQ=255) cgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGcc > 1:1732019‑M1/8‑71 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGa < 1:537217‑M1/54‑1 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgt > 1:2733840‑M1/3‑69 (MQ=255) ggggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgt > 1:2642953‑M1/1‑14 (MQ=255) gggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgtt < 1:2046125‑M1/71‑59 (MQ=255) GGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGc > 1:2702756‑M1/1‑71 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac < 1:680518‑M1/71‑64 (MQ=255) aTCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACt < 1:2605701/71‑1 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:1944028‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:1331371‑M1/1‑6 (MQ=255) cccACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacg > 1:786160‑M1/1‑6 (MQ=255) cccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAg > 1:1767569/1‑59 (MQ=255) ccataagcgctaacttaatggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc > 1:995692‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:181081‑M1/62‑61 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:2576442‑M1/1‑2 (MQ=255) ccTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGc < 1:1609697/71‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcct > 1:624720‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:911165‑M1/1‑1 (MQ=255) | TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGC > W3110S.gb/2018513‑2018653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |