| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 29 (0.990) | 13/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTT > W3110S.gb/575930‑576061 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:990429‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1803185‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:764028‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1280204‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:905031‑M2/1‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:341928‑M2/70‑70 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:1866946‑M2/69‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:2803619‑M2/68‑69 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:963021‑M2/2‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:26613‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:148415‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:1495704‑M2/68‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:2766719‑M2/68‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1807490‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2066739‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1071711‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1012236‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:163211‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1984960‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1393576‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1256291‑M2/68‑71 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1269450‑M2/4‑1 (MQ=255) atgaaccctgatctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2554155‑M2/68‑71 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1937452‑M2/4‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1676103‑M2/64‑64 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1539626‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1375319‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:172977‑M2/8‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:585816‑M2/2‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2320114‑M2/2‑1 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa < 1:2363476‑M2/10‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1103511‑M2/2‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1365330‑M2/3‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1514435‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2268383‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:974571‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:2376645‑M2/5‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:1184813‑M2/5‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:1372209‑M2/5‑1 (MQ=255) ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc > 1:2359104‑M2/56‑71 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:903587‑M2/4‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2096870‑M2/53‑56 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:989596‑M2/52‑57 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2201251‑M2/52‑57 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:935404‑M2/51‑51 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:517000‑M2/51‑53 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:2765025‑M2/8‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAc < 1:1291870‑M2/19‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1756783‑M2/1‑1 (MQ=255) agatgacaaacatgatctcatatcaggcacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:2533278‑M2/26‑1 (MQ=255) gatgacaaacatgatctcttatcagggacttgttcgcaccttcct < 1:2614854‑M2/1‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1203906‑M2/1‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:168908‑M2/1‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1206986‑M2/1‑1 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1100302‑M2/2‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:760308‑M2/42‑45 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2789493‑M2/42‑45 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAc > 1:1987495‑M2/42‑60 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg > 1:1343744‑M2/42‑71 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTg > 1:2233880‑M2/42‑71 (MQ=255) acaaacatgatctaatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa < 1:317175‑M2/18‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTa < 1:657097‑M2/6‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGTa < 1:2809937‑M2/6‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct > 1:2784004‑M2/39‑39 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct > 1:1116751‑M2/39‑39 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:1677846‑M2/4‑1 (MQ=255) catgatctcatatcagggacttgtttgcaccttccTTAGt > 1:889394‑M2/36‑40 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:2631299‑M2/36‑41 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:597250‑M2/36‑41 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1873215‑M2/36‑41 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1421001‑M2/36‑41 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:674276‑M2/25‑1 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTa > 1:1728100‑M2/33‑35 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAg > 1:2548144‑M2/33‑36 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAg > 1:1691683‑M2/33‑36 (MQ=255) atctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:9931‑M2/32‑58 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:1400370‑M2/24‑71 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:241191‑M2/24‑71 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:1813984‑M2/24‑71 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:394575‑M2/52‑1 (MQ=255) acttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa > 1:2179537‑M2/18‑42 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGcc > 1:2432786‑M2/15‑71 (MQ=255) gcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTCTCATCGTGAGCCCtttt < 1:594382‑M2/62‑1 (MQ=255) cttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:1329924‑M2/31‑1 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:40575‑M2/5‑37 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCAc > 1:2676209‑M2/4‑37 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTT > W3110S.gb/575930‑576061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |