| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 12 (0.410) | 19 (0.950) | 14/68 | NT | 65.3% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 12 (0.600) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
GCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCT > W3110S.gb/1211138‑1211266 | gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt > 1:2448879/1‑71 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga < 1:1256425/71‑1 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaagaa < 1:975612/71‑1 (MQ=255) cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga > 1:510862‑M2/53‑70 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa < 1:1400075‑M2/20‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaacaaaCGTTTATGAAAATGAAGAAATaa > 1:2764441‑M2/49‑71 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa < 1:353731/71‑1 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCg > 1:1688002‑M2/44‑45 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc > 1:2343438‑M2/43‑70 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc > 1:1486866‑M2/43‑70 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:1877211/1‑71 (MQ=255) ggcacacAAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTATATGAAAATGAAGAAATAACAAGCaa > 1:57262/4‑70 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATgg > 1:1871555‑M2/38‑71 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg < 1:189263/69‑1 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg < 1:632094/69‑1 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 1:939559‑M2/35‑71 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 1:1569972/1‑70 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:1264317/1‑71 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:2695186/1‑70 (MQ=255) cattgagttttgctccttctcccaaaccaaAGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:343135‑M2/31‑70 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 1:314986‑M2/12‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 1:2758969‑M2/12‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaagaa < 1:847476‑M2/19‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaagaa < 1:2565105‑M2/19‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:1450435‑M2/40‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:526445‑M2/40‑1 (MQ=255) gagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:1404785‑M2/27‑57 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:2365586‑M2/45‑1 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa < 1:2195486‑M2/29‑1 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa < 1:7330‑M2/29‑1 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:1428738‑M2/23‑71 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:1804794/1‑71 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:2144331‑M2/22‑52 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:2441814‑M2/49‑1 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 1:685010/1‑70 (MQ=255) gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 1:2618495/71‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGTAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:2375677‑M2/53‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 1:1291025‑M2/52‑1 (MQ=255) agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:808441/71‑1 (MQ=255) agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:666761/71‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa > 1:1385606‑M2/17‑39 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa > 1:1092481‑M2/17‑39 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:1005585‑M2/49‑1 (MQ=255) ttctcccaaacgaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:1402337‑M2/15‑53 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:80550‑M2/15‑56 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:730302‑M2/15‑56 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGAAAATGGcatca > 1:2277821‑M2/15‑53 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:2788827‑M2/13‑70 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATAATTCCTGCTTTTACCAgggg > 1:2473997‑M2/13‑70 (MQ=255) tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa < 1:1278415‑M2/29‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt > 1:2187996‑M2/11‑71 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:277082‑M2/10‑40 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:749296‑M2/10‑40 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:2410662‑M2/10‑71 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa < 1:2079586‑M2/29‑1 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa < 1:179633‑M2/64‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 1:123755‑M2/44‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:1520028‑M2/65‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:1869847‑M2/65‑1 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg > 1:1764320‑M2/5‑59 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 1:1294626‑M2/2‑43 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc > 1:2563276‑M2/2‑71 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt < 1:704150/71‑1 (MQ=255) cGTTTATGAAAATAAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt < 1:2252072/71‑1 (MQ=255) | GCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCT > W3110S.gb/1211138‑1211266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |