| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,257,455 | C→T | 74.0% | G9R (GGA→AGA) | yeiJ ← | predicted nucleoside transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,257,455 | 0 | C | T | 74.0% | 130.5 / 52.2 | 77 | G9R (GGA→AGA) | yeiJ | predicted nucleoside transporter |
| Reads supporting (aligned to +/- strand): ref base C (4/16); new base T (23/34); total (27/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GGTACGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGC > W3110S.gb/2257387‑2257521 | ggaaCGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTcc > 1:495673/4‑69 (MQ=255) gTACGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAg < 1:2313041/71‑1 (MQ=255) tGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACtt > 1:1269752/1‑68 (MQ=255) aTCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAaca < 1:1609742/63‑1 (MQ=255) aTCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAaca < 1:462609/63‑1 (MQ=255) cttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGa > 1:2549514/1‑71 (MQ=255) cttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGa > 1:2093828/1‑71 (MQ=255) cttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGa > 1:855632/1‑71 (MQ=255) cttcttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGa > 1:1066424/1‑71 (MQ=255) cttcttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATg < 1:213658/67‑1 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTGTCAGAACACTTCTCATGACATc < 1:2109973/69‑1 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATc < 1:1620876/69‑1 (MQ=255) cttGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATc < 1:278047/69‑1 (MQ=255) gTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCAt < 1:1662614/69‑1 (MQ=255) gTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCAt < 1:959097/69‑1 (MQ=255) tttACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGt < 1:2211362/71‑1 (MQ=255) tttACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGt < 1:524924/71‑1 (MQ=255) tttACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGt < 1:711486/71‑1 (MQ=255) agtGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGAt > 1:324743/3‑71 (MQ=255) cTGACAGTAAAAACGCAATCGTCTGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGAtt < 1:2189758/71‑1 (MQ=255) cTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGAt < 1:1464738/70‑1 (MQ=255) cTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGAt < 1:2262326/70‑1 (MQ=255) cTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGAt < 1:2140735/70‑1 (MQ=255) gACAGTAAAAACGCAATCGTCAGCAATACCCCCATTCCCAGaa > 1:2602988/1‑43 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCAt < 1:2548013/49‑1 (MQ=255) gTAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATa < 1:741360/59‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTtctc < 1:1512558/46‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTtctc < 1:2696946/46‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTtctc < 1:2688764/46‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGa > 1:2413484/1‑50 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGa > 1:1196106/1‑50 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGa > 1:2362106/1‑50 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGa > 1:1060807/1‑50 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCtt < 1:1033828/71‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTtct < 1:520036/45‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCAt < 1:127537/48‑1 (MQ=255) tAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCtt < 1:2375861/71‑1 (MQ=255) tAAAAACGCAATCGGCAGCAATACCACCATTCCCAGAACACTtct < 1:2319773/45‑1 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCTGAGaa > 1:366490/1‑37 (MQ=38) aaaaaCGCAATCGTCAGCAATACCACCATTCTCAGaa > 1:1405899/1‑37 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGt > 1:475375/1‑59 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCtt > 1:2682261/1‑70 (MQ=255) aaaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCAt < 1:2809552/47‑1 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTc < 1:1835426/70‑1 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:2310906/1‑71 (MQ=255) aaaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa < 1:1172348/71‑1 (MQ=255) aaaCGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCtt < 1:2134358/68‑1 (MQ=255) gCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:2770660/71‑1 (MQ=255) gCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:2243476/71‑1 (MQ=255) gCAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:213290/71‑1 (MQ=255) cAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCat < 1:2469799/71‑1 (MQ=255) cAATCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCat < 1:441323/71‑1 (MQ=255) tCGTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTAtc < 1:698942/56‑1 (MQ=255) gTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTgg > 1:541290/1‑71 (MQ=255) gTCAGCAATACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTg > 1:113666/1‑70 (MQ=255) aTACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGc < 1:1160307/66‑1 (MQ=255) tACCACCATTCTCAGAACACTTCTCATGACATCCa < 1:1471465/35‑1 (MQ=255) tACCACCATTCTCAGAACACTTCTCATGACATCCAt < 1:1037734/36‑1 (MQ=255) tACCACCATTCTCAGAACACTTCTCATGACATCCAt < 1:1306101/36‑1 (MQ=255) tACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:1679889/57‑1 (MQ=255) tACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:2170886/57‑1 (MQ=255) tACCACCATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa < 1:1319672/57‑1 (MQ=255) tACCACCATTCCCAGAACACTTCTCATGACATCCATAGTTATTATCTCTTCATGTCATATTGGGc < 1:1919982/65‑1 (MQ=255) accaccATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCa > 1:2208833/1‑51 (MQ=255) accaccATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGa > 1:1642357/1‑66 (MQ=255) accaccATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCt > 1:1244037/1‑71 (MQ=255) accaccATTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCt > 1:1346863/1‑71 (MQ=255) ccaccaTTCTCAGAACACTTCTCATGACATCCATAg > 1:593220/1‑36 (MQ=255) ccaccaTTCTCAGAACACTTCTCATGACATCCATAGTGAt < 1:1742355/40‑1 (MQ=255) ccaccaTTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTg > 1:786267/1‑60 (MQ=255) ccaccaTTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCtt > 1:807529/1‑71 (MQ=255) ccaccaTTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCt < 1:1039937/70‑1 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCat < 1:1647200/56‑1 (MQ=255) ccaccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCa > 1:2739199/1‑55 (MQ=255) caccaTTCCCAGAACACTTCTCATGACATCCATAGTGATTAtctc < 1:2316271/45‑1 (MQ=255) accaTTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTc < 1:587574/71‑1 (MQ=255) aTTCTCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGc > 1:2089029/1‑71 (MQ=255) ttCTCAGAACACTTCTCATGACATCCATAGTGATTAtctc < 1:173152/40‑1 (MQ=255) cccAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTc > 1:2345475/1‑65 (MQ=255) cccAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTc > 1:577805/1‑65 (MQ=255) | GGTACGCAGGCTGATCTTCTTCTTGTTTACTGACAGTAAAAACGCAATCGTCAGCAATACCACCATTCCCAGAACACTTCTCATGACATCCATAGTGATTATCTCTTCATGTCATATTGGGCGACGGCTTTCTGC > W3110S.gb/2257387‑2257521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |