Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,343,341 T→C 80.9% I36T (ATC→ACC)  yhbN → predicted transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,343,3410TC80.9% 108.7 / 18.2 47I36T (ATC→ACC) yhbNpredicted transporter subunit
Reads supporting (aligned to +/- strand):  ref base T (4/5);  new base C (20/18);  total (24/23)
Fisher's exact test for biased strand distribution p-value = 7.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGT  >  W3110S.gb/3343280‑3343402
                                                             |                                                             
aGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGa                                                      <  1:2772713/71‑1 (MQ=255)
aGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGa                                                      <  1:377892/71‑1 (MQ=255)
 gCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGa                                                      <  1:18595/70‑1 (MQ=255)
     aCTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCg                                                  <  1:1220540/70‑1 (MQ=255)
         cTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGAcc                                              <  1:254758/70‑1 (MQ=255)
          tGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGAcc                                              <  1:1919852/69‑1 (MQ=255)
                  aGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATctct                                    >  1:310492/1‑71 (MQ=255)
                  aGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATctct                                    >  1:792602/1‑71 (MQ=255)
                  aGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATctct                                    >  1:1924192/1‑71 (MQ=255)
                     aTTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa                                 <  1:384815/71‑1 (MQ=255)
                      ttCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa                                 >  1:2419617/1‑70 (MQ=255)
                      ttCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa                                 <  1:2748974/70‑1 (MQ=255)
                        ccGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCtt                                   <  1:1053206/66‑1 (MQ=255)
                        ccGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGatat                              >  1:908305/1‑71 (MQ=255)
                              tttGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCgg                                                 <  1:2715297/46‑1 (MQ=255)
                              tttGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGata                               >  1:1520300/1‑64 (MQ=255)
                                tGCCGTAACCGGAGACACTGATCAGCCGCCCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGc                       >  1:568128/1‑70 (MQ=255)
                                tGCCGTAACCGGAGACACTGATCAGCCGACCCACAtt                                                        >  1:1582790/1‑37 (MQ=255)
                                tGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGa                                                >  1:2667168/1‑45 (MQ=255)
                                tGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGc                       >  1:2441190/1‑70 (MQ=255)
                                tGCCGTAACCGGAGACACTGATCAGACGACCCACATTGaa                                                     >  1:1218144/1‑40 (MQ=38)
                                    gTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt                  <  1:2739934/71‑1 (MQ=255)
                                    gTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt                  <  1:857950/71‑1 (MQ=255)
                                       aCCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGt               >  1:2335095/1‑71 (MQ=255)
                                           gagaCACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTAcc           >  1:1207424/1‑71 (MQ=255)
                                               cacTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTa       <  1:2320014/71‑1 (MQ=255)
                                               cacTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTa       <  1:775595/71‑1 (MQ=255)
                                                acTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTg                 <  1:398564/60‑1 (MQ=255)
                                                acTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTAc      >  1:751738/1‑71 (MQ=255)
                                                 cTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt                  <  1:1159396/58‑1 (MQ=255)
                                                 cTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt                  <  1:2544251/58‑1 (MQ=255)
                                                 cTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCttt        <  1:119482/68‑1 (MQ=255)
                                                   gATCAGCCGATCCACATTGATTCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg   >  1:1363403/1‑71 (MQ=255)
                                                   gATCAGCCGATCCACATTGAATCGGACCCGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCg    >  1:896741/1‑70 (MQ=255)
                                                   gATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg   >  1:46622/1‑71 (MQ=255)
                                                   gATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCg    >  1:1467680/1‑70 (MQ=255)
                                                   gATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg   >  1:2077021/1‑71 (MQ=255)
                                                   gATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg   >  1:1500714/1‑71 (MQ=255)
                                                    aTCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt  <  1:2584587/71‑1 (MQ=255)
                                                    aTCAGACGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCttt        <  1:1839532/65‑1 (MQ=255)
                                                     tCAGCCGACCCACATTGAATCGGACCAGCAATctct                                    >  1:2216365/1‑36 (MQ=255)
                                                     tCAGCCGACCCACATTGAATCGGACCAGCAATctct                                    >  1:1888943/1‑36 (MQ=255)
                                                     tCAGCCGACCCACATTGAATCGGACCAGCAATctct                                    >  1:73967/1‑36 (MQ=255)
                                                     tCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt  <  1:2389776/70‑1 (MQ=255)
                                                     tCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt  <  1:1969295/70‑1 (MQ=255)
                                                      cAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa                                 >  1:183975/1‑38 (MQ=255)
                                                        gCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt  <  1:2005894/67‑1 (MQ=255)
                                                             |                                                             
AGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGT  >  W3110S.gb/3343280‑3343402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: