| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 3,343,341 | T→C | 80.9% | I36T (ATC→ACC) | yhbN → | predicted transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,343,341 | 0 | T | C | 80.9% | 108.7 / 18.2 | 47 | I36T (ATC→ACC) | yhbN | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (4/5); new base C (20/18); total (24/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGT > W3110S.gb/3343280‑3343402 | aGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGa < 1:2772713/71‑1 (MQ=255)aGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGa < 1:377892/71‑1 (MQ=255) gCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGa < 1:18595/70‑1 (MQ=255) aCTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCg < 1:1220540/70‑1 (MQ=255) cTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGAcc < 1:254758/70‑1 (MQ=255) tGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGAcc < 1:1919852/69‑1 (MQ=255) aGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATctct > 1:310492/1‑71 (MQ=255) aGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATctct > 1:792602/1‑71 (MQ=255) aGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATctct > 1:1924192/1‑71 (MQ=255) aTTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa < 1:384815/71‑1 (MQ=255) ttCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa > 1:2419617/1‑70 (MQ=255) ttCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa < 1:2748974/70‑1 (MQ=255) ccGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCtt < 1:1053206/66‑1 (MQ=255) ccGGCATTTGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGatat > 1:908305/1‑71 (MQ=255) tttGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCgg < 1:2715297/46‑1 (MQ=255) tttGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGata > 1:1520300/1‑64 (MQ=255) tGCCGTAACCGGAGACACTGATCAGCCGCCCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGc > 1:568128/1‑70 (MQ=255) tGCCGTAACCGGAGACACTGATCAGCCGACCCACAtt > 1:1582790/1‑37 (MQ=255) tGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGa > 1:2667168/1‑45 (MQ=255) tGCCGTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGc > 1:2441190/1‑70 (MQ=255) tGCCGTAACCGGAGACACTGATCAGACGACCCACATTGaa > 1:1218144/1‑40 (MQ=38) gTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt < 1:2739934/71‑1 (MQ=255) gTAACCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt < 1:857950/71‑1 (MQ=255) aCCGGAGACACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGt > 1:2335095/1‑71 (MQ=255) gagaCACTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTAcc > 1:1207424/1‑71 (MQ=255) cacTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTa < 1:2320014/71‑1 (MQ=255) cacTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTa < 1:775595/71‑1 (MQ=255) acTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTg < 1:398564/60‑1 (MQ=255) acTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTAc > 1:751738/1‑71 (MQ=255) cTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt < 1:1159396/58‑1 (MQ=255) cTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGt < 1:2544251/58‑1 (MQ=255) cTGATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCttt < 1:119482/68‑1 (MQ=255) gATCAGCCGATCCACATTGATTCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg > 1:1363403/1‑71 (MQ=255) gATCAGCCGATCCACATTGAATCGGACCCGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCg > 1:896741/1‑70 (MQ=255) gATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg > 1:46622/1‑71 (MQ=255) gATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCg > 1:1467680/1‑70 (MQ=255) gATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg > 1:2077021/1‑71 (MQ=255) gATCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCgg > 1:1500714/1‑71 (MQ=255) aTCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt < 1:2584587/71‑1 (MQ=255) aTCAGACGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCttt < 1:1839532/65‑1 (MQ=255) tCAGCCGACCCACATTGAATCGGACCAGCAATctct > 1:2216365/1‑36 (MQ=255) tCAGCCGACCCACATTGAATCGGACCAGCAATctct > 1:1888943/1‑36 (MQ=255) tCAGCCGACCCACATTGAATCGGACCAGCAATctct > 1:73967/1‑36 (MQ=255) tCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt < 1:2389776/70‑1 (MQ=255) tCAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt < 1:1969295/70‑1 (MQ=255) cAGCCGACCCACATTGAATCGGACCAGCAATCTCTTGa > 1:183975/1‑38 (MQ=255) gCCGACCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGt < 1:2005894/67‑1 (MQ=255) | AGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGT > W3110S.gb/3343280‑3343402 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |