Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,488,502 C→T 15.2% L47L (CTG→TTG)  yijO → predicted DNA‑binding transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,488,5020CT15.2% 117.8 / 12.5 46L47L (CTG→TTG) yijOpredicted DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (19/20);  new base T (4/3);  total (23/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

GCAGTAACGGCCCGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTCCCGGCGATGTGCTG  >  W3110S.gb/3488440‑3488561
                                                              |                                                           
gcagTAACGGCCCTGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGTAAGGt                                                     <  1:1130293/71‑1 (MQ=255)
      aCGGCCCGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGAGttt                                               >  1:2445586/1‑71 (MQ=255)
        ggCCCGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgt                                             >  1:712920/1‑71 (MQ=255)
          cccGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgtt                                            <  1:156385/70‑1 (MQ=255)
            cGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGAt                                         <  1:2146243/71‑1 (MQ=255)
               tGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGAGTttgtt                                            <  1:1753940/65‑1 (MQ=255)
               tGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTgg                                                          <  1:1307081/51‑1 (MQ=255)
                 cccGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGa                                                   >  1:929737/1‑56 (MQ=255)
                 cccGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGa                                                   >  1:27993/1‑56 (MQ=255)
                  ccGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttg                                              <  1:1864325/60‑1 (MQ=255)
                      tCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGAt                                         <  1:355453/61‑1 (MQ=255)
                       cTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCt                                                            >  1:168241/1‑41 (MQ=255)
                       cTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCt                                                            >  1:454630/1‑41 (MQ=255)
                       cTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTg                               >  1:1627193/1‑70 (MQ=255)
                       cTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTg                               >  1:1781480/1‑70 (MQ=255)
                       cTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTg                               >  1:2275801/1‑70 (MQ=255)
                       cTTGAGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTg                               >  1:2656651/1‑70 (MQ=255)
                           cGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGc                           <  1:1766343/70‑1 (MQ=255)
                           cGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGc                           <  1:1404500/70‑1 (MQ=255)
                             tATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGaa                                                        <  1:2546908/39‑1 (MQ=255)
                               tCAGGTCGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGt                      <  1:724552/71‑1 (MQ=255)
                               tCAGGTCGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGt                      <  1:563015/71‑1 (MQ=255)
                               tCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGaa                                                        >  1:666432/1‑37 (MQ=255)
                                 aGGTCGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGt                      >  1:81295/1‑69 (MQ=255)
                                   gTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgtt                                            <  1:432253/45‑1 (MQ=255)
                                   gTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgtt                                            <  1:970698/45‑1 (MQ=255)
                                   gTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGc                           <  1:881057/62‑1 (MQ=255)
                                    tCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgtt                                            <  1:2377833/44‑1 (MQ=255)
                                    tCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgtt                                            <  1:474657/44‑1 (MQ=255)
                                     cGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGa                                                   >  1:2203971/1‑36 (MQ=255)
                                     cGATTTTCCACGGCTGGAAATTGTGTTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTc                >  1:1907119/1‑71 (MQ=255)
                                     cGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTc                >  1:409877/1‑71 (MQ=255)
                                      gATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttg                                              >  1:840277/1‑40 (MQ=255)
                                      gATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttg                                              >  1:1634182/1‑40 (MQ=255)
                                        ttttCCACGGCTGGAAATTGTGCTGGAAGGTGAGtt                                                <  1:2624726/36‑1 (MQ=255)
                                        ttttCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGtt                 >  1:2415134/1‑67 (MQ=255)
                                         tttCCACGGCTGGAAATTGTGCTGGAAGGTGAGTttgtt                                            >  1:1353662/1‑39 (MQ=255)
                                          ttCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGgcgc                                 >  1:690256/1‑49 (MQ=255)
                                          ttCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGgcgc                                 >  1:1876242/1‑49 (MQ=255)
                                           tCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTCCCGGc           <  1:2057310/70‑1 (MQ=255)
                                                ggCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTCCCGGCGAtgtg     <  1:1596892/71‑1 (MQ=255)
                                                     gAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTCCCGGCGATGTGCTg  <  1:1934555/69‑1 (MQ=255)
                                                        aTTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGtt                     <  1:1344190/47‑1 (MQ=255)
                                                          tgtgCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAAc                        >  1:1254694/1‑42 (MQ=255)
                                                           gtgCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAg                   >  1:1251485/1‑46 (MQ=255)
                                                            tgCTGTAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGtt                     <  1:2364204/43‑1 (MQ=255)
                                                              |                                                           
GCAGTAACGGCCCGGTGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATTGTGCTGGAAGGTGAGTTTGTTGATACCGGCGCTGGAGCAACGTTAGTTCCCGGCGATGTGCTG  >  W3110S.gb/3488440‑3488561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: