Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,824,524 T→G 100% pseudogene (657/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,824,5240TG100.0% 80.6 / NA 26pseudogene (657/687 nt)rphECK3633:JW3618:b3643; ribonuclease PH
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (19/7);  total (19/7)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATTGAAGTGCAGGGGACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCATCTTGTTGGCTCTGGCCCGAGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTA  >  W3110S.gb/3824459‑3824589
                                                                 |                                                                  
atTGAAGTGCAGGGGACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGc                                                               >  1:1262329/1‑71 (MQ=255)
atTGAAGTGCAGGGGACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGc                                                               >  1:865390/1‑71 (MQ=255)
    aaGTGCAGGGGACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCg                                                            <  1:2686987/70‑1 (MQ=255)
    aaGTGCAGGGGACGGCAGAAGCCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCg                                                            <  1:2003614/70‑1 (MQ=255)
         cAGGGGACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAgggg                                                      >  1:1596705/1‑70 (MQ=255)
             ggACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAg                                                         <  1:737490/63‑1 (MQ=255)
                   cAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATcc                                            <  1:671018/71‑1 (MQ=255)
                    aGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAgggggaa                                                   >  1:833934/1‑59 (MQ=255)
                    aGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAgggggaa                                                   >  1:2325679/1‑59 (MQ=255)
                     gAAGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCAt                                          <  1:49532/71‑1 (MQ=255)
                       aGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCAtt                                         >  1:227821/1‑70 (MQ=255)
                       aGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTg                                        >  1:1135652/1‑71 (MQ=255)
                       aGGCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTg                                        >  1:1468992/1‑71 (MQ=255)
                         gCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTg                                        >  1:2612223/1‑69 (MQ=255)
                         gCGAGCCGTTCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTg                                        >  1:1509908/1‑69 (MQ=255)
                                  tCACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACg                                >  1:543213/1‑68 (MQ=255)
                                   cACCCATGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGa                                  >  1:1318325/1‑65 (MQ=255)
                                        aTGAAGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAggcg                       <  1:361800/71‑1 (MQ=255)
                                           aaGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAg                                     >  1:1097722/1‑54 (MQ=255)
                                           aaGAGCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGaa                           >  1:840021/1‑64 (MQ=255)
                                             gagCTACTCACCTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCt                  >  1:2265279/1‑71 (MQ=255)
                                                      accTTGTTGGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGc                                    >  1:874939/3‑44 (MQ=37)
                                                         ttgttgGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGAtt      >  1:273489/1‑71 (MQ=255)
                                                         ttgtagGCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCg                                   >  1:1529531/1‑42 (MQ=255)
                                                              ggCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGgcgc                   >  1:2603998/1‑53 (MQ=255)
                                                              ggCGCTGGCCCGAGGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTa  <  1:761685/70‑1 (MQ=255)
                                                                 |                                                                  
ATTGAAGTGCAGGGGACGGCAGAAGGCGAGCCGTTCACCCATGAAGAGCTACTCATCTTGTTGGCTCTGGCCCGAGGGGAATCGAATCCATTGTAGCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTA  >  W3110S.gb/3824459‑3824589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: