Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,303,633 G→T 100% Q246Y (CAG→TAT oppA → oligopeptide transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,303,6330GT100.0% 81.2 / NA 29Q246Y (CAG→TAToppAoligopeptide transporter subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (12/17);  total (12/17)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCG  >  W3110S.gb/1303566‑1303683
                                                                   |                                                  
tAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATCAACTATGTa                                                 <  1:28543/71‑1 (MQ=255)
  aacgaacgAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAAc                                               >  1:353785/1‑71 (MQ=255)
   acgaacgaATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAAcc                                              <  1:2692533/71‑1 (MQ=255)
     gaacgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTa                                            <  1:2439644/71‑1 (MQ=255)
       acgaaTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTaa                                                >  1:497024/1‑65 (MQ=255)
           aTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGcc                                      <  1:283710/71‑1 (MQ=255)
           aTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGcc                                      <  1:2497483/71‑1 (MQ=255)
           aTCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGcc                                      <  1:2517264/71‑1 (MQ=255)
               ttCTTGAACGCAGCCCGACCTACTGGAACTACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTAtt                                  >  1:2782141/1‑71 (MQ=255)
                      aCGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTg                           <  1:2721814/71‑1 (MQ=255)
                                  cTACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATg               >  1:436157/1‑71 (MQ=255)
                                   tACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                   <  1:870128/66‑1 (MQ=255)
                                   tACTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                   <  1:1674934/66‑1 (MQ=255)
                                    aCTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGc                                >  1:2512911/1‑52 (MQ=255)
                                     cTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGTCTATTGCTTCTGAAGTTAc                    >  1:560717/1‑63 (MQ=255)
                                     cTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGa                 >  1:403189/1‑66 (MQ=255)
                                     cTGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGa                 >  1:285893/1‑66 (MQ=255)
                                      tGGAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAg                        >  1:2598487/1‑58 (MQ=255)
                                       ggAACAACGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAAc          >  1:1673895/1‑71 (MQ=255)
                                             acGCGAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTAcc                   <  1:1151226/56‑1 (MQ=255)
                                              cgcgAAATCCGTTATTAACTATGTAACCTATTTGCCTa                                    <  1:2004230/38‑1 (MQ=25)
                                               gcgAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg  <  1:190439/71‑1 (MQ=255)
                                                 gAAAACCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGAt                <  1:2506443/55‑1 (MQ=255)
                                                   aaaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGt                       <  1:300150/46‑1 (MQ=39)
                                                   aaaCCGTTATTAACTATGTAACCTATTTGCCTATTGCTTCTGAAGt                       <  1:259246/46‑1 (MQ=39)
                                                         ttattaACTATGTAACCTATTAGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCg  <  1:1626777/61‑1 (MQ=255)
                                                          tattaACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGa                 <  1:318046/45‑1 (MQ=38)
                                                           attaACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGa                 >  1:2012385/1‑44 (MQ=38)
                                                           attaACTATGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGa                 >  1:2729078/1‑44 (MQ=38)
                                                                   |                                                  
TAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCG  >  W3110S.gb/1303566‑1303683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: