| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,352,814 | G→A | 75.0% | intergenic (‑61/+307) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,352,814 | 0 | G | A | 75.0% | 52.4 / 18.2 | 32 | intergenic (‑61/+307) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (4/4); new base A (11/13); total (15/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAAACCCATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATA > W3110S.gb/1352744‑1352871 | gaaaACCCATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAg < 1:67556/71‑1 (MQ=255) aaaCCCATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATa < 1:2365990/71‑1 (MQ=255) aaaCCCATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATa < 1:1895486/71‑1 (MQ=255) cATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAAc < 1:436598/69‑1 (MQ=255) cATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAAc < 1:2461086/69‑1 (MQ=255) cATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAg < 1:1010675/71‑1 (MQ=255) tAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAg < 1:253704/69‑1 (MQ=255) tAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACa < 1:1141355/68‑1 (MQ=255) gCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACg < 1:2810558/71‑1 (MQ=255) gCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTAc > 1:2036753/1‑70 (MQ=255) ccTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGAt > 1:1992355/1‑70 (MQ=255) cTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATa > 1:888792/1‑70 (MQ=255) tATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACa > 1:2073339/1‑64 (MQ=255) aTTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACg > 1:810354/1‑71 (MQ=255) gttgATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATaaa > 1:177776/1‑66 (MQ=255) gttgATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGaa < 1:964968/58‑1 (MQ=255) aTGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGt < 1:708689/66‑1 (MQ=255) tGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGt < 1:860697/65‑1 (MQ=255) gCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGTtattat > 1:2247000/1‑70 (MQ=255) cTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATaa > 1:2165417/1‑71 (MQ=255) cTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGtta > 1:865057/1‑65 (MQ=255) gtgCCTGAAAATCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGttat > 1:360708/1‑60 (MQ=255) aaaaTCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGttatta > 1:110923/1‑55 (MQ=255) aaaaTCAGGCGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGttatta > 1:1465805/1‑55 (MQ=255) cAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAg > 1:2057212/1‑69 (MQ=255) gCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATc < 1:1601896/52‑1 (MQ=255) gCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCt < 1:1322057/71‑1 (MQ=255) cGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCta < 1:2735548/71‑1 (MQ=255) cGATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCta < 1:190199/71‑1 (MQ=255) gATTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAg > 1:1955685/1‑64 (MQ=255) aTTCGTCGTTTTAATAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCtata < 1:1608272/71‑1 (MQ=255) tcgtTTTAATAAACAGTACGAACAGATAAACGGttat < 1:983774/37‑1 (MQ=255) gtTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCtg > 1:2578733/1‑52 (MQ=255) | GAAAACCCATAGCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATA > W3110S.gb/1352744‑1352871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |