| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 1,806,448 | T→C | 58.8% | pseudogene (1641/1900 nt) pseudogene (1157/1416 nt) |
arpB → arpB → |
ECK1718:JW5278+JW1710:b4494; hypothetical protein ECK1718:JW1710:b1721; hypothetical protein, C‑ter fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,806,448 | 0 | T | C | 58.8% | 17.2 / 37.8 | 34 | pseudogene (1641/1900 nt) pseudogene (1157/1416 nt) | arpB arpB | ECK1718:JW5278+JW1710:b4494; hypothetical protein ECK1718:JW1710:b1721; hypothetical protein, C‑ter fragment |
| Reads supporting (aligned to +/- strand): ref base T (7/7); new base C (6/14); total (13/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
TACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTT > W3110S.gb/1806381‑1806515 | tACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATcata > 1:982618/1‑71 (MQ=255)tACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATcata < 1:438283/71‑1 (MQ=255) gAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGcc < 1:1341071/70‑1 (MQ=255) gAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGAATCATACATCGcc < 1:1937583/70‑1 (MQ=255) aGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACACCTGCATCATACATCGCCATGAGc > 1:2105401/1‑70 (MQ=255) gCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATc > 1:1749157/1‑60 (MQ=255) gCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGc > 1:638418/1‑69 (MQ=255) cTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAg < 1:300006/71‑1 (MQ=255) cTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAg > 1:2621545/1‑71 (MQ=255) aaCATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGcc > 1:1398623/1‑60 (MQ=255) catcatTGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGt < 1:2428922/70‑1 (MQ=255) tcatGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAAt > 1:936078/1‑71 (MQ=255) tcatGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAAt > 1:2328860/1‑71 (MQ=255) catGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGc < 1:390312/54‑1 (MQ=255) atGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATg < 1:653470/70‑1 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCa > 1:741851/1‑54 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATg < 1:2485370/69‑1 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGaa < 1:1697482/71‑1 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGaa < 1:192525/71‑1 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGaa < 1:1966074/71‑1 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGaa < 1:242700/71‑1 (MQ=255) tGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGaa < 1:1657302/71‑1 (MQ=255) ggATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGaa < 1:890878/70‑1 (MQ=255) aTTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGAAGAc < 1:192275/71‑1 (MQ=255) taAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGAcgtcgt < 1:1259732/70‑1 (MQ=255) aaaaGGAGCTACAGCACAGGGAACCCCTGCATcata > 1:298305/1‑36 (MQ=255) aaGGAGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTa < 1:2486649/71‑1 (MQ=255) aGCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCt > 1:1369768/1‑70 (MQ=255) gCTACAGCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTAt < 1:128887/67‑1 (MQ=255) gCACAGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATc < 1:1086437/71‑1 (MQ=255) aGGGAACCCCTGCATCATACATCGCCATGAGCAAGGGt < 1:759712/38‑1 (MQ=255) gggAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTtata > 1:894405/1‑62 (MQ=255) gggAACCCCTGCATCATACATCGCCATGAGCAAGGGt < 1:1100276/37‑1 (MQ=255) gAACCCCTGCATCATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGa < 1:2749112/66‑1 (MQ=255) ccTGCATCATACATCGCCATGAGCAAGGGTAATGAAGa > 1:2253288/1‑38 (MQ=255) gCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCttt > 1:358005/1‑71 (MQ=255) gCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCttt > 1:965327/1‑71 (MQ=255) catcatACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCtttt > 1:1701203/1‑71 (MQ=255) | TACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACCCCTGCATTATACATCGCCATGAGCAAGGGTAATGAAGACGTCGTGTTATCTTATATATCGACGCTGGGTGCTTTT > W3110S.gb/1806381‑1806515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |