| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 4310365 | 4311563 | 1199 | 27 [0] | [0] 27 | insH–[alsK] | insH,[alsK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4310364 | 0 (0.000) | 23 (1.070) | 7/104 | NT | 100% | intergenic (‑286/‑69) | yjcS/insH | predicted alkyl sulfatase/IS5 element protein |
| ? | W3110S.gb | 4311564 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310312‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA > W3110S.gb/4311564‑4311631 GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAA > 1:1076747/1‑70GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAA > 1:742493/1‑70GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAA > 1:1188385/1‑70GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAA > 1:1589939/1‑70 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:1898052/71‑1 GCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:1653905/71‑1 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAA < 1:1926204/70‑1 GCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:1889988/59‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGC > 1:984265/1‑71 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGA < 1:975387/57‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGA < 1:892181/57‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGA < 1:1882816/57‑1 CGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTT < 1:20391/46‑1 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:1402598/1‑70 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:1396990/1‑69 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:367337/1‑69 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:1527068/1‑69 ATGGGGCTTTAGCAGAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATA > 1:1768660/1‑48 ATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATA > 1:1356189/1‑48 ATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATA > 1:1308939/1‑48 ATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATA > 1:365278/1‑48 ATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATA > 1:588652/1‑48 ATGGGGCTTTAGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATA > 1:1051599/1‑48 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA < 1:120142/70‑1 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA < 1:590154/70‑1 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA < 1:1119350/70‑1 AGCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA < 1:1621448/70‑1 GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310312‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGC‑AAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAA > W3110S.gb/4311564‑4311631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |