| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 7 (0.300) | 30 (1.340) +TC |
7/108 | NT | 89.9% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314384‑314521 | cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:1508973‑M1/2‑1 (MQ=255)cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:972471‑M1/2‑1 (MQ=255)cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:756968‑M1/2‑1 (MQ=255)cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:512828‑M1/2‑1 (MQ=255)cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:1961975‑M1/2‑1 (MQ=255)cactttctgaccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTc < 1:2698‑M1/2‑1 (MQ=255) ccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGc < 1:1000742‑M1/11‑1 (MQ=255) ccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGc < 1:1547422‑M1/11‑1 (MQ=255) ccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGc < 1:1554718‑M1/11‑1 (MQ=255) ccttcgtccagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGc < 1:615235‑M1/11‑1 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:1125482‑M1/54‑71 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:655106‑M1/54‑71 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:1385283‑M1/54‑71 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaACTTACCCAGCAATAGTg > 1:1283921‑M1/54‑71 (MQ=255) ttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:1886458‑M1/53‑70 (MQ=255) cagagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGa > 1:1592660‑M1/52‑71 (MQ=255) agagatttgtaaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGa > 1:337674‑M1/51‑70 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:24603‑M1/27‑1 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:50531‑M1/27‑1 (MQ=255) taaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:1593291‑M1/42‑71 (MQ=255) taaccatcgttctggatagcagagaagtgtacgaacactgaGCTTACCCAGCAATAGTGGACACGCGGCTa > 1:1006420‑M1/42‑71 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTg < 1:20546/59‑1 (MQ=255) aaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:242043‑M1/41‑70 (MQ=255) aaccatcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:245813‑M1/41‑70 (MQ=255) atcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:1971087‑M1/32‑1 (MQ=255) atcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:1667528‑M1/33‑1 (MQ=255) atcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:568850‑M1/33‑1 (MQ=255) atcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:1571384‑M1/33‑1 (MQ=255) atcgttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:594547‑M1/33‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:339438/1‑70 (MQ=255) gttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:700810‑M1/34‑71 (MQ=255) gttctggatagcagagaagtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1646768‑M1/34‑71 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1840394‑M1/32‑69 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:555009‑M1/32‑69 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1703021‑M1/32‑69 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1901889‑M1/32‑69 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:1938721‑M1/32‑69 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1830215‑M1/44‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1597475‑M1/44‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1207769‑M1/44‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1140545‑M1/44‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:815915‑M1/44‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1083813‑M1/44‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcag < 1:1833700‑M1/47‑1 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:1963181/1‑53 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:554341/1‑68 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:1578695/1‑68 (MQ=255) agtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:487059‑M1/17‑71 (MQ=255) agtgtacgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:475687‑M1/17‑71 (MQ=255) cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:838932/71‑1 (MQ=255) cTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:1200313/71‑1 (MQ=255) ttaatcacttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:1103289‑M1/58‑1 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGTCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:18143‑M1/12‑71 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:1374952‑M1/12‑71 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:710015‑M1/12‑71 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:198967‑M1/12‑71 (MQ=255) gggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc > 1:1745740‑M1/12‑71 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1964852‑M1/11‑71 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:189110‑M1/11‑71 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:334426‑M1/11‑71 (MQ=255) ggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1680213‑M1/11‑71 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1288443‑M1/11‑71 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1044555‑M1/11‑71 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1253995‑M1/11‑71 (MQ=255) cgaacactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1183263‑M1/11‑71 (MQ=255) gatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1358122‑M1/10‑70 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:34214‑M1/57‑1 (MQ=255) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:29419/1‑70 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:18745/1‑70 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:1610241/1‑70 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:1046968/1‑70 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:1296497/1‑70 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:1616706/1‑70 (MQ=35) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:1264420/1‑70 (MQ=35) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1416865‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:596497‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1449363‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1300259‑M1/53‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:573066‑M1/57‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:876607‑M1/57‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:847244‑M1/57‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1011465‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:498972‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:956253‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1422939‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:812416‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1016448‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1547469‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1627822‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:167229‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:178937‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:1943668‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCACTCAGAGGTGACTCACATGACa < 1:1828583‑M1/68‑1 (MQ=255) | GTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAA > W3110S.gb/314384‑314521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |