New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 315707	NA (NA)	19 (0.820)	6/112	NT	100%	coding (654/687 nt)	ykgA	predicted DNA‑binding transcriptional regulator
	?	W3110S.gb	576911 =	0 (0.000)					coding (76/498 nt)	ybcS	predicted lysozyme

TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCG  >  W3110S.gb/315644‑315762                                                                |                                                        tCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTc                                                  <  1:919721/71‑1 (MQ=40) tCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTc                                                  <  1:1513443/71‑1 (MQ=40)  ccGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTc                                                  <  1:634770/70‑1 (MQ=255)   cGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCt                                                >  1:1423767/1‑71 (MQ=255)                    aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc                               >  1:304943/1‑71 (MQ=255)                    aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc                               >  1:315014/1‑71 (MQ=255)                    aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCActc                               >  1:1641961/1‑71 (MQ=255)                          cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg                         <  1:112631/71‑1 (MQ=255)                          cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg                         <  1:1462505/71‑1 (MQ=255)                          cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg                         <  1:65722/71‑1 (MQ=255)                          cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTgg                         <  1:760370/71‑1 (MQ=255)                          cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCCTTTgg                         <  1:1381661/71‑1 (MQ=255)                                   gCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCTCTCTTTTgg                         <  1:1217343/62‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:590694/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:490847/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:358259/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:325518/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:99883/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:27944/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:1913858/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:1539336/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:1132795/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:1606351/71‑1 (MQ=255)                                        tgtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:1819966/71‑1 (MQ=255)                                         gtCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATAtt           <  1:1418833/70‑1 (MQ=255)                                          tCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGGCGTTGTCCACTCTTTTgg                         <  1:171182/55‑1 (MQ=255)                                            cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCAt                      >  1:849814/1‑56 (MQ=255)                                            cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca       >  1:1730936/1‑71 (MQ=255)                                            cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca       >  1:690925/1‑71 (MQ=255)                                            cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca       >  1:881455/1‑71 (MQ=255)                                            cATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTcaca       >  1:913929/1‑71 (MQ=255)                                              tatTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTca         <  1:1269892/67‑1 (MQ=255)                                                ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc    <  1:324392/70‑1 (MQ=255)                                                ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc    <  1:1594303/70‑1 (MQ=255)                                                ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc    <  1:440801/70‑1 (MQ=255)                                                ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc    <  1:977414/70‑1 (MQ=255)                                                ttACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATAc    <  1:122394/70‑1 (MQ=255)                                                 tACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCg  >  1:1741790/1‑71 (MQ=255)                                                  aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCg  <  1:1589671/70‑1 (MQ=255)                                                  aCGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCg  <  1:1003292/70‑1 (MQ=255)                                                                |                                                        TCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATAAAGTCCTCGGGTCGTTGTCCACTCTTTTGGCATGTCAGCATATTCACATACCG  >  W3110S.gb/315644‑315762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.