New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2173564	NA (NA)	17 (0.740)	6/110	NT	100%	pseudogene (307/2041 nt) pseudogene (307/339 nt)	gatR gatR	DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
	?	W3110S.gb	3920278 =	0 (0.000)					coding (91/213 nt)	cspA	major cold shock protein

AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGG  >  W3110S.gb/2173516‑2173626                                                 |                                                               aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt                                           <  1:110774/70‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt                                           <  1:1126930/70‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt                                           <  1:133022/70‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt                                           <  1:1435682/70‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt                                           <  1:1756972/70‑1 (MQ=255) aaaaCAAGAACCTCGCTTAGGCCTGTGTACATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt                                           <  1:718901/70‑1 (MQ=255)                                 atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCt                        >  1:1080178/1‑57 (MQ=255)                                 atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTgg          >  1:1037566/1‑71 (MQ=255)                                 atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTgg          >  1:798930/1‑71 (MQ=255)                                  ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc         >  1:1643156/1‑71 (MQ=255)                                  ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc         >  1:509131/1‑71 (MQ=255)                                  ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc         >  1:808370/1‑71 (MQ=255)                                  ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc         >  1:857729/1‑71 (MQ=255)                                  ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgc         >  1:86938/1‑71 (MQ=255)                                         ggTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTgg  >  1:812002/1‑71 (MQ=255)                                                 |                                                               AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGG  >  W3110S.gb/2173516‑2173626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.