New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2412225	NA (NA)	35 (1.510)	8/112	NT	100%	intergenic (‑55/‑782)	insA/yfbQ	IS1 element protein/predicted aminotransferase
	?	W3110S.gb	= 3748807	0 (0.000)					coding (176/984 nt)	tnaB	tryptophan transporter of low affinity

GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCT  >  W3110S.gb/2412157‑2412283                                                                     |                                                           gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa                                                           >  1:1145546/1‑70 (MQ=31) gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa                                                           >  1:34925/1‑70 (MQ=31)                        tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt                                   >  1:106942/1‑71 (MQ=255)                        tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt                                   >  1:825569/1‑71 (MQ=255)                                                  aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa         <  1:468043/71‑1 (MQ=255)                                                  aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa         <  1:656014/71‑1 (MQ=255)                                                     aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa         <  1:580851/68‑1 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:1275255/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:1700592/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:17145/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:1855589/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:1922406/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:56926/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:65002/1‑71 (MQ=255)                                                         tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt  >  1:972552/1‑71 (MQ=255)                                                                     |                                                           GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCT  >  W3110S.gb/2412157‑2412283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.