| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 14 (0.600) | 18 (0.770) | 6/112 | NT | 41.9% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 36 (1.550) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
TATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA > W3110S.gb/2809329‑2809454 | atcgaacacatcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCg > 1:1661994‑M2/70‑71 (MQ=255) cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAtt < 1:892561/71‑1 (MQ=255) cacaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAtt < 1:1277980/71‑1 (MQ=255) tcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTa < 1:100529‑M2/12‑1 (MQ=255) tcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTa < 1:963640‑M2/12‑1 (MQ=255) tcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTa < 1:1679952‑M2/12‑1 (MQ=255) tcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTa < 1:1614270‑M2/12‑1 (MQ=255) tcatgcagtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTa < 1:690919‑M2/12‑1 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTTCTATATCGGCTGAAATTa < 1:1587897/71‑1 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTa < 1:1543105/71‑1 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTa < 1:1822771/71‑1 (MQ=255) acaAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTa < 1:1499001/71‑1 (MQ=255) caAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAAtt < 1:428332/69‑1 (MQ=255) aGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:684464/1‑69 (MQ=255) aGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:546256/1‑69 (MQ=255) aGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTaa > 1:1235602/1‑69 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:222603/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:1913856/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:1887401/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:259511/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:427406/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:1203255/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:1292643/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:1578205/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:643934/71‑1 (MQ=255) tCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGt < 1:74208/71‑1 (MQ=255) gtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGt < 1:1816258‑M2/19‑1 (MQ=255) gtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGt < 1:1111581‑M2/19‑1 (MQ=255) gtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGt < 1:1511742‑M2/19‑1 (MQ=255) gtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGt < 1:853505‑M2/19‑1 (MQ=255) gtcgatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGt < 1:1428289‑M2/19‑1 (MQ=255) gatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCa > 1:935952‑M2/50‑70 (MQ=255) gatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCa > 1:1522303‑M2/50‑70 (MQ=255) gatgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCa > 1:1928575‑M2/50‑70 (MQ=255) atgcaattcccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCa < 1:1697953‑M2/21‑1 (MQ=255) cccggcggaattgattgagaaggtttgcggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATg > 1:1054121‑M2/41‑71 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:405821/70‑1 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:1754635/70‑1 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:1571841/70‑1 (MQ=255) aCTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCCtt < 1:842495/70‑1 (MQ=255) cTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:1324319/69‑1 (MQ=255) cTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:1395357/69‑1 (MQ=255) tttGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:908739/64‑1 (MQ=255) tttGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGcc < 1:413118/70‑1 (MQ=255) tttGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGcc < 1:1428674/70‑1 (MQ=255) tGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa < 1:263683/70‑1 (MQ=255) cggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:1094972‑M2/57‑1 (MQ=255) cggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:1533345‑M2/57‑1 (MQ=255) cggaactatctaaCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:624957‑M2/57‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:1553123/69‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:779285/69‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:1190158/69‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:1643653/69‑1 (MQ=255) tCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa < 1:1129912/69‑1 (MQ=255) ttACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGa < 1:558320/42‑1 (MQ=255) atatCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGtt < 1:1878383/46‑1 (MQ=255) | TATATAACCCACAAGAATCATTTTTCTAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA > W3110S.gb/2809329‑2809454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |