| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 4,174,189 | C→T | 43.7% | intergenic (+20/+9) | bfr → / ← gspO | bacterioferritin, iron storage and detoxification protein/bifunctional prepilin leader peptidase and methylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,174,189 | 0 | C | T | 43.7% | 18.9 / 60.6 | 48 | intergenic (+20/+9) | bfr/gspO | bacterioferritin, iron storage and detoxification protein/bifunctional prepilin leader peptidase and methylase |
| Reads supporting (aligned to +/- strand): ref base C (13/14); new base T (11/10); total (24/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGGCCTGCAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAC > W3110S.gb/4174123‑4174255 | tGGGCCTGCAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTc > 1:275100/1‑71 (MQ=255)tGGGCCTGCAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTc > 1:864948/1‑71 (MQ=255)tGGGCCTGCAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTc > 1:1461558/1‑71 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGCGGGAGAACCCTCCCGGTtaa > 1:902015/1‑71 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGtt < 1:1127853/69‑1 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGtt < 1:382562/69‑1 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGtt < 1:876117/69‑1 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGt > 1:1074539/1‑68 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTtaa > 1:58363/1‑71 (MQ=255) cAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTta > 1:401030/1‑70 (MQ=255) aaaaTTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGtt < 1:1039175/68‑1 (MQ=255) aTCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGATGGAGAATCCTCCCGGTTAATAagag < 1:1386226/70‑1 (MQ=255) aTCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAagag < 1:833440/70‑1 (MQ=255) aTCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAagag < 1:148610/70‑1 (MQ=255) aTCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAagag < 1:148976/70‑1 (MQ=255) aTCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAagag < 1:412833/70‑1 (MQ=255) aTCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAagag < 1:1669097/70‑1 (MQ=255) aaGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATc < 1:1951726/67‑1 (MQ=255) cacaGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCa < 1:1317020/71‑1 (MQ=255) cacaGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCa < 1:1313199/71‑1 (MQ=255) cacaGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCa < 1:1154484/71‑1 (MQ=255) cacaGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCa < 1:1086699/71‑1 (MQ=255) caGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGa < 1:984784/71‑1 (MQ=255) caGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGa < 1:844726/71‑1 (MQ=255) caGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGa < 1:399383/71‑1 (MQ=255) caGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGa < 1:1066414/71‑1 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTtaata > 1:1472996/1‑41 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt > 1:371374/1‑71 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt > 1:111007/1‑71 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt > 1:1374813/1‑71 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt < 1:137217/71‑1 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt < 1:1530623/71‑1 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt < 1:1492546/71‑1 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt < 1:140989/71‑1 (MQ=255) agGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAt < 1:755416/71‑1 (MQ=255) ttGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCa > 1:1911158/1‑70 (MQ=255) ttGAGCCGTGTCGGGAGGGAGAACCCGCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTAta > 1:764308/1‑68 (MQ=255) tGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCAtg > 1:683221/1‑71 (MQ=255) tGAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCAt > 1:1268283/1‑70 (MQ=255) gAGCCGTGTCGGGAGGGAGAATCCTCCCGGTTAATAAGAGATCCAGGCCAGATAcccc > 1:1540612/1‑58 (MQ=255) agaATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:750586/1‑71 (MQ=255) agaATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:799893/1‑71 (MQ=255) agaATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:50290/1‑71 (MQ=255) agaATCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:278774/1‑71 (MQ=255) agaACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATTATGCTGCCGAGCGCAAGCCAc > 1:529581/1‑71 (MQ=255) agaACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:351055/1‑71 (MQ=255) agaACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:454046/1‑71 (MQ=255) agaACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAc > 1:1853748/1‑71 (MQ=255) | TGGGCCTGCAAAATTATCTGCAAGCACAGATCCGCGAAGAAGGTTGAGCCGTGTCGGGAGGGAGAACCCTCCCGGTTAATAAGAGATCCAGGCCAGATACCCCAGGTTTATCATGCTGCCGAGCGCAAGCCAC > W3110S.gb/4174123‑4174255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |