Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | W3110S.gb | 4,528,968 | A→G | 100% | L242P (CTA→CCA) | yjhH ← | predicted lyase/synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,528,968 | 0 | A | G | 95.0% | 67.0 / ‑4.0 | 20 | L242P (CTA→CCA) | yjhH | predicted lyase/synthase |
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (3/16); minor base T (1/0); total (4/16) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.00e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CTGTATTTGATCAGTGAGACAAACGGTGTTTCGAGGGCGTAAATAGCGGGCAGTTGTAGTAGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGA > W3110S.gb/4528908‑4529025 | cTGTATTTGATCAGTGAGACAAACGGTGTTTCGAGGGCGTAAATAGCGGGCAGTTGTAGTTGTTTTTTAtt > 1:137398/1‑71 (MQ=255) cTGTATTTGATCAGTGAGACAAACGGTGTTTCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTAtt > 1:1416362/1‑71 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCa > 1:915244/1‑61 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCa > 1:317140/1‑61 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:169930/70‑1 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:611161/70‑1 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:1939813/70‑1 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:1772080/70‑1 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:1317006/70‑1 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:1038235/70‑1 (MQ=255) tCGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:1493861/70‑1 (MQ=255) cGAGGGCGTAAATAGCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCtt < 1:1414963/69‑1 (MQ=255) gctggCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:1750310/68‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:124399/71‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:1575136/71‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:622107/71‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:388537/71‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:1606544/71‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:1760674/71‑1 (MQ=255) gCGGGCAGTTGTAGTGGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTa < 1:1686881/71‑1 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:1618586/1‑63 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:1008080/1‑63 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:1227647/1‑63 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:1692039/1‑63 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:633827/1‑63 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:792149/1‑63 (MQ=255) gtagtgGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGACTTCACGCCAGgcgc > 1:353347/1‑57 (MQ=255) gtagtgGTTTTTTATTCAGCCTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGa > 1:524182/1‑63 (MQ=255) | CTGTATTTGATCAGTGAGACAAACGGTGTTTCGAGGGCGTAAATAGCGGGCAGTTGTAGTAGTTTTTTATTCAGCGTCGCAGCGGTCGCCAGATCGCCTTCACGCCAGGCGCGGTAGA > W3110S.gb/4528908‑4529025 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |