Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 4,549,753 C→T 100% intergenic (+42/‑25) fimC → / → fimD chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb4,549,7530CT91.7% 29.0 / ‑3.3 12intergenic (+42/‑25)fimC/fimDchaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (3/8);  total (3/9)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC  >  W3110S.gb/4549683‑4549817
                                                                      |                                                                
cccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGcc                                                                  <  1:1119767/71‑1 (MQ=255)
cccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGcc                                                                  <  1:1673912/71‑1 (MQ=255)
cccccAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGcc                                                                  <  1:286009/71‑1 (MQ=255)
        aTGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCTGGGTGAtt                                                          >  1:1285478/1‑71 (MQ=255)
         tGAAGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCTGGGTGAttt                                                         >  1:403049/1‑71 (MQ=255)
                       gAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCGGAGGaat                                           <  1:1694401/71‑1 (MQ=255)
                        aaTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCTGGGTGATTTTAAGCCGGAGGaata                                          <  1:1763043/71‑1 (MQ=255)
                        aaTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCTGGGTGATTTTAAGCCGGAGGaata                                          <  1:22031/71‑1 (MQ=255)
                                aGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGcc                                                                  <  1:623614/39‑1 (MQ=255)
                                              gCCTGAATAAAAAGAATTGACTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa                     <  1:613546/70‑1 (MQ=255)
                                              gCCTGAATAAAAAGAATTGACTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa                     <  1:950819/70‑1 (MQ=255)
                                              gCCTGAATAAAAAGAATTGACTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa                     <  1:993509/70‑1 (MQ=255)
                                                      aaaaaGAATTGACTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAg            >  1:1713273/1‑71 (MQ=255)
                                                                 aCTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacacac  <  1:486979/70‑1 (MQ=255)
                                                                 aCTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacacac  <  1:776797/70‑1 (MQ=255)
                                                                 aCTGCTGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAacacac  <  1:779624/70‑1 (MQ=255)
                                                                      |                                                                
CCCCCAAAATGACGGGCGTAATGGAATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACAC  >  W3110S.gb/4549683‑4549817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: