Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | W3110S.gb | 1,057,926 | G→A | 77.3% | R151W (CGG→TGG) | torR ← | DNA‑binding response regulator in two‑component regulatory system with TorS |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 1,057,926 | 0 | G | A | 77.3% | 35.7 / 9.2 | 22 | R151W (CGG→TGG) | torR | DNA‑binding response regulator in two‑component regulatory system with TorS |
Reads supporting (aligned to +/- strand): ref base G (3/2); new base A (4/13); total (7/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.74e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 |
GGTCAGTTTAATCGGCTCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGTT > W3110S.gb/1057900‑1057980 | ggTCAGTTTAATCGGCTCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGc < 1:779621/71‑1 (MQ=255) ggTCAGTTTAATCGGCTCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGc < 1:1352384/71‑1 (MQ=255) tCAGTTTAATCGGCTCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGa > 1:701681/1‑71 (MQ=255) tCAGTTTAATCGGCTCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGa > 1:471123/1‑71 (MQ=255) tCAGTTTAATCGGATCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGa > 1:91224/1‑71 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGa > 1:472644/1‑35 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGtt > 1:42083/1‑71 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGtt > 1:1048079/1‑71 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:290128/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:814650/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:684498/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:493958/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:232734/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:213000/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:1929782/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:1588488/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:1347674/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:123181/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGt < 1:1213201/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATACCAGt < 1:1285186/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGCGACACATTCAGACAATAACCGGCAAAGCCATAGCAGt < 1:1795567/70‑1 (MQ=255) aTCGGCTCGCCATCCCACTCCAGCGTATGGCGAGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGtt > 1:507086/1‑71 (MQ=255) | GGTCAGTTTAATCGGCTCGCCATCCCGCTCCAGCGTATGGCGCGACACATTCAGGCAATAACCGGCAAAGCGATAGCAGTT > W3110S.gb/1057900‑1057980 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |