Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,172,268 T→C 100% K1092E (AAG→GAG)  mfd ← transcription‑repair coupling factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,172,2680TC100.0% 18.8 / NA 7K1092E (AAG→GAG) mfdtranscription‑repair coupling factor
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (5/2);  total (5/2)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCC  >  W3110S.gb/1172237‑1172322
                               |                                                      
ccAATCAACCAGGCCGGATTAACTTGATTCTCCTAGGCAAATTCGATCAccc                                    >  1:1775989/1‑52 (MQ=255)
ccAATCAACCAGGCCGGATTAACGTGATTCTCCTCGGCAAATTCGa                                          >  1:338559/1‑46 (MQ=255)
ccAATCAACCAGGCCGGATTAACGTGATTCTCCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTc                 >  1:1687049/1‑71 (MQ=255)
ccAATCAACCAGGCCGGATTAACGTGATTCTCCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTc                 >  1:204435/1‑71 (MQ=255)
ccAATCAACCAGGCCGGATTAACGTGATTCTCCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTc                 >  1:930719/1‑71 (MQ=255)
               ggATTAACGTGATTCTCCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATccc  <  1:564499/71‑1 (MQ=255)
               ggATTAACGTGATTCTCCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATccc  <  1:699904/71‑1 (MQ=255)
                               |                                                      
CCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCC  >  W3110S.gb/1172237‑1172322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: