| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 70,244 | T→C | 30.4% | intergenic (‑196/‑143) | araB ← / → araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 70,244 | 0 | T | C | 30.4% | 59.8 / 35.5 | 46 | intergenic (‑196/‑143) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| Reads supporting (aligned to +/- strand): ref base T (11/21); new base C (10/4); total (21/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.74e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGTTAGCGAG > W3110S.gb/70184‑70299 | tgtgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGt > 1:1381078/1‑71 (MQ=255) tgGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTa > 1:1500581/1‑71 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:983994/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:1134196/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:1159838/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:1213849/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:59844/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:500423/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:1400295/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:359158/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:313618/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:198188/71‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAg < 1:498101/71‑1 (MQ=255) ccGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCttt < 1:1065690/70‑1 (MQ=255) ccGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCttt < 1:1695801/70‑1 (MQ=255) ccGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCttt < 1:1027763/70‑1 (MQ=255) acacTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAg < 1:1534755/50‑1 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:1699471/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:926910/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:165926/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:27286/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:187167/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:1818580/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:1741888/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCg > 1:89794/1‑71 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCg > 1:477549/1‑71 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGTCACGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTa > 1:1305801/1‑68 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCtt > 1:975174/1‑52 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCtt > 1:1661567/1‑52 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCtt > 1:628161/1‑52 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCtt > 1:1268494/1‑52 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCtt > 1:376256/1‑52 (MQ=255) tttGTTACGCGTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCtt > 1:420022/1‑52 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:1662336/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:905312/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:68604/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:521535/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:431537/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:175408/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:225722/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:202425/70‑1 (MQ=255) aCGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTgg < 1:193407/70‑1 (MQ=255) cgTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGt > 1:1769251/1‑69 (MQ=255) cgTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGt > 1:1890985/1‑69 (MQ=255) agTTTTTGTCATGGCTTTGGCCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGt > 1:1610962/2‑69 (MQ=255) tGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGTTAGCgag < 1:1725818/70‑1 (MQ=255) | TGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGTTAGCGAG > W3110S.gb/70184‑70299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |