Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 2,893,179 A→C 100% I110L (ATT→CTT)  ygcP → predicted anti‑terminator regulatory protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb2,893,1790AC92.9% 96.2 / ‑2.3 28I110L (ATT→CTT) ygcPpredicted anti‑terminator regulatory protein
Reads supporting (aligned to +/- strand):  ref base A (2/0);  new base C (19/7);  total (21/7)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ACCAAAGCCTCAATGTTGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTATTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGA  >  W3110S.gb/2893116‑2893237
                                                               |                                                          
aCCAAAGCCTCAATGTTGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTATTGTTGa                                                     >  1:356054/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTa                                                            >  1:1390162/1‑49 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTa                                                            >  1:1755111/1‑49 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTa                                                            >  1:142823/1‑49 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTa                                                            >  1:1431179/1‑49 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTa                                                            >  1:1448311/1‑49 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:653113/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:1894968/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:389433/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:422812/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:1640825/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:1410234/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:845591/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:1363869/1‑71 (MQ=255)
               ttGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTca                                      >  1:858176/1‑71 (MQ=255)
                  aaaGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCacaa                                   <  1:582896/71‑1 (MQ=255)
                  aaaGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCacaa                                   <  1:528708/71‑1 (MQ=255)
                  aaaGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCacaa                                   <  1:470408/71‑1 (MQ=255)
                  aaaGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCacaa                                   <  1:103792/71‑1 (MQ=255)
                       ggCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTg                              <  1:1105084/71‑1 (MQ=255)
                       ggCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTg                              <  1:1325456/71‑1 (MQ=255)
                             agCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAg                         >  1:202264/1‑70 (MQ=255)
                             agCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAg                         >  1:1757362/1‑70 (MQ=255)
                             agCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTATTGTTGATTCAATTTCGTTTCACAACATTGATAAg                         >  1:29483/1‑70 (MQ=255)
                                    ggTTTTTTCTGTATTCATCTCCTGTTTCTTGTTGATTCAATTTCGTTTCacaa                                   <  1:1574615/53‑1 (MQ=255)
                                       tttttCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTgcgc               >  1:377069/1‑70 (MQ=255)
                                       tttttCTGTATTCATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTgcgc               >  1:187508/1‑70 (MQ=255)
                                                   cATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGGAAGTTGCGCAATCGAATCCGGa  >  1:378029/1‑71 (MQ=255)
                                                   cATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGa  >  1:1899255/1‑71 (MQ=255)
                                                   cATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGa  >  1:1710816/1‑71 (MQ=255)
                                                   cATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGa  >  1:1562117/1‑71 (MQ=255)
                                                   cATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGa  >  1:1493277/1‑71 (MQ=255)
                                                   cATCGCCTGTTTCTTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGa  >  1:1374679/1‑71 (MQ=255)
                                                               |                                                          
ACCAAAGCCTCAATGTTGAAAGCGGCAAGAGCGGAAGGTTTTTTCTGTATTCATCGCCTGTTTATTGTTGATTCAATTTCGTTTCACAACATTGATAAGCAAGTTGCGCAATCGAATCCGGA  >  W3110S.gb/2893116‑2893237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: