| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 4,002,862 | (T)7→8 | intergenic (‑87/‑145) | pitA ← / → yhiN | phosphate transporter, low‑affinity/predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,002,855 | 1 | . | T | 98.4% | 211.3 / ‑3.2 | 64 | intergenic (‑80/‑152) | pitA/yhiN | phosphate transporter, low‑affinity/predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (33/30); total (33/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GCGGCGCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGAC‑TTTTTTTGATTTGCCCCCTGTATGGATTTCACTCAAAAAATAATTATCTTATATAATTCAGG > W3110S.gb/4002806‑4002917 | gcggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGc < 1:36732/65‑1 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:957883/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:2093991/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:2303370/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:2601735/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:2629867/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:1451344/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:2853453/1‑65 (MQ=255) cggcgCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGcc > 1:327112/1‑65 (MQ=255) gcgcATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGccc < 1:1398835/64‑1 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGa > 1:1604940/1‑63 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2878960/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2801272/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:3069287/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2710193/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2603383/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:371463/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2470766/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:78773/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2286700/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:216187/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2272811/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2004833/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:1097067/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:149605/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:1422251/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:2004831/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGAt > 1:167616/1‑64 (MQ=255) gTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCACTGTATGGAt > 1:2217872/1‑64 (MQ=38) tCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTc > 1:190826/1‑64 (MQ=255) tCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTc > 1:868540/1‑64 (MQ=255) tCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTc > 1:115238/1‑64 (MQ=255) tCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTc > 1:772732/1‑64 (MQ=255) tCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTc > 1:612407/1‑64 (MQ=255) tCGCGGCGCGGGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTc > 1:242400/1‑64 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1267490/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1284359/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:3012238/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:3010292/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1461377/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:316375/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1263290/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1262529/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1227072/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:638616/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:699465/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:728433/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1293656/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2033339/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2106233/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:215749/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1802592/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2232660/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1778210/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2398090/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1637006/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1566872/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2625504/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2664953/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:283997/65‑1 (MQ=255) gcgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2866091/65‑1 (MQ=255) cgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:1735876/64‑1 (MQ=255) cgcggGCAAAGTGAAATATAGACTTTTTTTTGATTTGCCCCCTGTATGGATTTCACTCaaaaaa < 1:2138511/64‑1 (MQ=255) gAC‑TTTTTTTGATTTGCCCCCTGTATGGATTTCACTCAAAAAATAATTATCTTATATAATTCAgg < 1:1020121/65‑1 (MQ=255) | GCGGCGCATTATCAGTGACTTTCGCGGCGCGGGCAAAGTGAAATATAGAC‑TTTTTTTGATTTGCCCCCTGTATGGATTTCACTCAAAAAATAATTATCTTATATAATTCAGG > W3110S.gb/4002806‑4002917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |