| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,482,576 | (T)5→6 | coding (1725/1758 nt) | ynbC → | predicted hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,482,571 | 1 | . | T | 87.5% | 18.6 / ‑2.1 | 8 | coding (1720/1758 nt) | ynbC | predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (7/0); total (8/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCACTCGTGCGTGATGCCGGATTTGATAAATGCACACAACGGATTGATGAGTGGGGTA‑TTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGT > W3110S.gb/1482514‑1482613 | tCACTCGTGCGTGATGCCGGATTTGATAAATGCACACAACGGATTGATGAGTGGGGTA‑TTTTTAc > 1:1984737/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:1051999/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:1301120/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:1370370/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:1678791/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:2325237/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:235422/1‑65 (MQ=255) caACGGATTGATGAGTGGGGTATTTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGt > 1:2840924/1‑65 (MQ=255) | TCACTCGTGCGTGATGCCGGATTTGATAAATGCACACAACGGATTGATGAGTGGGGTA‑TTTTTACGGTTTCGATGGCGGTGCGTCGTGATAACTGAACGT > W3110S.gb/1482514‑1482613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |