New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2172308 =	NA (NA)	28 (0.720)	4/120	0.3	93.4%	pseudogene (1563/2041 nt)	gatR	DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
	?	W3110S.gb	= 3920281	2 (0.050)					coding (88/213 nt)	cspA	major cold shock protein

TTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTT  >  W3110S.gb/3920220‑3920342                                                              |                                                              ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga                                                            <  1:766847‑M2/65‑4 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga                                                            <  1:2010472‑M2/65‑4 (MQ=255) ttCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg                                                             <  1:2163431‑M2/64‑3 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:2728241‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:2145136‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:2001262‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:1969502‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:1935310‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:3052374‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:340239‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:1394921‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:1313910‑M2/1‑48 (MQ=255)               cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:10485‑M2/1‑48 (MQ=255)                agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat                                              >  1:2473892‑M2/1‑47 (MQ=255)                 gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag                                            >  1:1141851‑M2/1‑46 (MQ=255)                 gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag                                            >  1:652617‑M2/1‑46 (MQ=255)                 gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag                                            >  1:682174‑M2/1‑46 (MQ=255)                 gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag                                            >  1:2724375‑M2/1‑46 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:2124537‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:2171661‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:2013777‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:1912984‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:3009018‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:3072724‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:1762029‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:1559138‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:1535097‑M2/65‑43 (MQ=255)                                        aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa                     <  1:1317921‑M2/65‑43 (MQ=255)                                                           acacATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt  <  1:2096514/65‑1 (MQ=255)                                                           acacATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt  <  1:1891569/65‑1 (MQ=255)                                                              |                                                              TTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTT  >  W3110S.gb/3920220‑3920342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.