| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 108 (2.840) | 8/118 | 0.1 | 94.1% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 7 (0.180) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 115 total aligned reads displayed.
CTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA > W3110S.gb/3932867‑3932992 | cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:660910/65‑1 (MQ=255)cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:1107935/65‑1 (MQ=255)cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:2798371/65‑1 (MQ=255)cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:269041/65‑1 (MQ=255)cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:1717013/65‑1 (MQ=255)cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:572292/65‑1 (MQ=255) tcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAgtgtt > 1:1670176‑M2/60‑63 (MQ=255) tcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAgtgtt > 1:1847680‑M2/60‑63 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:2711402‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:161524‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:3089736‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1739351‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1822184‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1687509‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1919249‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:916834‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:2806067‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:875014‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1595777‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:956883‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:326344‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:63096‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:2647991‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1242084‑M2/6‑1 (MQ=255) cacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:384316‑M2/6‑1 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:1569810‑M2/6‑1 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt < 1:302642‑M2/6‑1 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2709423‑M2/9‑4 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2043594‑M2/9‑4 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:1958388‑M2/9‑4 (MQ=255) atctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:110844‑M2/56‑65 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:2546453‑M2/51‑65 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:2448717‑M2/51‑65 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:1170631‑M2/51‑65 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:1511380‑M2/51‑65 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:1650124‑M2/51‑65 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc < 1:2893523‑M2/18‑1 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc < 1:2411638‑M2/18‑1 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc < 1:1799032‑M2/18‑1 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc < 1:2546105‑M2/18‑1 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc < 1:1952588‑M2/18‑1 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc < 1:2074281‑M2/18‑1 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:2538951‑M2/19‑1 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:709822‑M2/19‑1 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:2076861‑M2/19‑1 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:36458‑M2/19‑1 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAg < 1:1950969/42‑1 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGt > 1:2889582‑M2/37‑39 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGATAAGTg > 1:84412‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2824738‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:1217634‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2665788‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2664218‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:1234625‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2579684‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2952320‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:1872822‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2874092‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2793554‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:1910929‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2369382‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2202568‑M2/37‑63 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:2172917‑M2/37‑63 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa > 1:734429‑M2/33‑63 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:960528‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:1320329‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:1007678‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:2369618‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:571165‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:954293‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:1100413‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:1754581‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:3076572‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:329056‑M2/36‑1 (MQ=255) cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg < 1:1557668‑M2/36‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1745903‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:517236‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1341854‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1359034‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:583963‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:2982184‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1890550‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:220050‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:2444478‑M2/42‑1 (MQ=255) gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:697347‑M2/42‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:251979‑M2/42‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGGCAg < 1:1844736‑M2/36‑1 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa > 1:1634493‑M2/3‑49 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc > 1:1176153‑M2/3‑64 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:2391654‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:763386‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:781915‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:578125‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:2768791‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:2355639‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:211748‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:1949992‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:187623‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:1599174‑M2/3‑65 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:1009767‑M2/3‑65 (MQ=255) | CTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA > W3110S.gb/3932867‑3932992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |