Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1141981	1141996	16	16 [0]	[0] 22	flgL	flagellar hook‑filament junction protein

GTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCT  >  W3110S.gb/1141917‑1141980                                                                | gggACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:2984873/62‑1 (MQ=255) gTGACGATGACCGGGTCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:1985773/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:1356824/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:1384295/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:1507830/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:1685029/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:171742/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:1889132/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:202652/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:2556151/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:3047255/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:379373/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:786288/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:952568/64‑1 (MQ=255) gTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:988937/64‑1 (MQ=255)                     cTGTCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCt  <  1:2851188/44‑1 (MQ=255)                                                                | GTGACGATGACCGGGCCTCGCTGGCTACGGATATTCAGGGGCTTCGTGACCAGTTGCTGAATCT  >  W3110S.gb/1141917‑1141980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑