Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1211263	1211264	2	11 [0]	[0] 3	pin	site‑specific DNA recombinase

GGCATCATTCCTGCTTTTACCAGGGGGATTTAACA  >  W3110S.gb/1211228‑1211262                                   | ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:126083/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:1304426/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:1325954/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:2070445/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:2179827/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:2465911/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:3050720/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:605345/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:959693/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:97713/35‑1 (MQ=255) ggCATCATTCCTGCTTTTACCAGGGGGATTTAACa  <  1:978935/35‑1 (MQ=255)                                   | GGCATCATTCCTGCTTTTACCAGGGGGATTTAACA  >  W3110S.gb/1211228‑1211262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑