Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1973341	1973346	6	35 [0]	[0] 11	tar	methyl‑accepting chemotaxis protein II

GCGAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGA  >  W3110S.gb/1973276‑1973340                                                                 | gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2900080/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2570796/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2619074/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2632309/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2730122/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:275985/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2799809/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2829091/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2834502/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2459991/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2938811/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:3064882/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:397635/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:556667/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:599482/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:713547/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:824572/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:835915/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1653542/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1019847/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1143130/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1194677/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1357240/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1392347/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1406441/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1452700/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1506711/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1004836/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1667492/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:1759514/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2020893/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2246173/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2265344/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2326622/1‑65 (MQ=255) gcgAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGa  >  1:2360814/1‑65 (MQ=255)                                                                 | GCGAGGATATTAGTCTGGAAGGCAATACCGTCGATAACGCTGATAATGTCGGCAATTTTCTTCGA  >  W3110S.gb/1973276‑1973340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑