Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2017542	2017555	14	13 [0]	[1] 12	fliG	flagellar motor switching and energizing component

TCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTG  >  W3110S.gb/2017498‑2017541                                            | tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:1122313/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:1212373/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:1714669/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:1722148/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:1966228/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:2347497/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:2414037/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:2547842/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:2919666/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:666341/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:748800/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:769218/44‑1 (MQ=255) tCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTg  <  1:856134/44‑1 (MQ=255)                                            | TCGCCACCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTG  >  W3110S.gb/2017498‑2017541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑