Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2017841	2017851	11	12 [0]	[0] 14	fliG	flagellar motor switching and energizing component

GTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCTT  >  W3110S.gb/2017776‑2017840                                                                 | gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:133802/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:1624697/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:1870426/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:220469/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:2579191/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:3069158/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:330082/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:610980/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:727124/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:792041/65‑1 (MQ=255) gTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCtt  <  1:793823/65‑1 (MQ=255)                cTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAATTTCtt  <  1:2507121/50‑1 (MQ=255)                                                                 | GTGGATTCCGAATCGCTGTTGATCGCGCTGAAAGGAGCCGAGCAGCCACTGCGCGAGAAATTCTT  >  W3110S.gb/2017776‑2017840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑