Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2074584	2074672	89	3 [0]	[0] 2	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

GGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGC  >  W3110S.gb/2074519‑2074583                                                                 | ggTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTTCAGGTGGACGCCGGTGGTACAGc  <  1:1826775/65‑1 (MQ=255) ggTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGc  <  1:1356786/65‑1 (MQ=255) ggTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGc  <  1:1746449/65‑1 (MQ=255)                                                                 | GGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGC  >  W3110S.gb/2074519‑2074583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑