Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1414089	1414128	40	17 [0]	[0] 22	intR	integrase

ACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCT  >  W3110S.gb/1414129‑1414193 |                                                                 aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATGTCAAGTATCGTCAGGTTtcttct  <  1:1735171/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:1119825/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:936810/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:605657/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:498264/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:436972/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:335363/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:1609934/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTtccttc   <  1:1113216/64‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:2089122/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:2156508/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:2327106/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:2398582/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:2669786/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:2876911/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:3005363/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:3098406/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:3106544/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:1915462/65‑1 (MQ=255) aCTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:1659063/65‑1 (MQ=255) aCTGTTCGGATCCAGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTttcttc   <  1:1544986/64‑1 (MQ=255) aCTCTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTtcttct  <  1:869438/65‑1 (MQ=255) |                                                                 ACTGTTCGGATCCCGGCATTTGTTTTTGGGGGACCGAACATATCAAGTATCGTCAGGTTTCTTCT  >  W3110S.gb/1414129‑1414193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑