Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1488666	1488699	34	2 [0]	[0] 6	[hrpA]	[hrpA]

AAAAAACCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAA  >  W3110S.gb/1488700‑1488762 |                                                               aaaaaaCCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAggg        >  1:1258297/1‑57 (MQ=255) aaaaaaCCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTaaaaa  >  1:1098274/1‑63 (MQ=255) aaaaaaCCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTaaaaa  >  1:2616014/1‑63 (MQ=255) aaaaaaCCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTaaaaa  >  1:284748/1‑63 (MQ=255) aaaaaaCCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTaaaa   >  1:1811238/1‑62 (MQ=255) aaaaaaCCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTaaaa   >  1:715453/1‑62 (MQ=255) |                                                               AAAAAACCCGGTAAGCATTTAGCGCCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAA  >  W3110S.gb/1488700‑1488762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑