Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3842809	3842816	8	4 [0]	[0] 5	rfaL	O‑antigen ligase

AGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTAATAAAAATA  >  W3110S.gb/3842817‑3842880 |                                                                aGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTaataaaaata  >  1:1143624/1‑64 (MQ=255) aGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTaataaaaata  >  1:2778584/1‑64 (MQ=255) aGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTaataaaaata  >  1:982821/1‑64 (MQ=255) aGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTaataaaaat   >  1:685412/1‑63 (MQ=255) aGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTaataaa      >  1:1464791/1‑60 (MQ=255) |                                                                AGGGTTGCTCTGGTTTGTGTTAGCGCCAGAACATAAAGTACCGCGCAACTATTTAATAAAAATA  >  W3110S.gb/3842817‑3842880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑