| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 928,112 | G→T | T502T (ACC→ACA) | cydC ← | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 928,112 | 0 | G | T | 77.2% | 79.8 / 41.4 | 57 | T502T (ACC→ACA) | cydC | fused cysteine transporter subunits and membrane component and ATP‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (12/1); new base T (0/44); total (12/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.84e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCATTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTCATCCAGCAACACCAGTGGCGCATCATGTAACAGCGCACGGGCGATAG > W3110S.gb/928056‑928167 | atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:1441997/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:2400189/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:176836/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:2417332/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:1808711/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:598649/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:730939/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:2173694/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:1286895/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:1221782/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:1178659/1‑65 (MQ=255)atcatTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTc > 1:96048/1‑65 (MQ=255) aGGATCTGACTTTCGGTTGTGTCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1752395/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:3032576/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2937107/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:3028100/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2701719/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2799432/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2793932/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2767977/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2710101/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:244681/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:330845/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:349065/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:403028/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:440410/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:453102/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:510934/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:532278/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:586414/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:808568/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:88847/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:956168/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:187026/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1085991/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1185581/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1405922/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1581645/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1591943/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1672259/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:176699/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1774567/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1821858/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2662693/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1927053/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1945640/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2092394/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2152158/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2227160/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2479649/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2509206/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2634427/64‑1 (MQ=255) aGGATCTGACTTTCGGTTGTGGCATCTAACCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2467802/64‑1 (MQ=255) aGGATCTGACATTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:1135274/64‑1 (MQ=255) ggATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTATGTTCATCCAGCAATACCAgcggcg < 1:1549933/63‑1 (MQ=255) ggATCTGACTTTCGGTTGTGGCATCTAAGCCTTCTGTAGGTTCATCCAGCAATACCAgcggcg < 1:2957300/63‑1 (MQ=255) ccTTCGGTAGGTTCATCCAGCAACACCAGTGGCGCATCATGTAACAGCGCACGGGCGATAg < 1:1082478/61‑1 (MQ=255) | ATCATTTCTGCAAGCAATTCAAGGATCTGGCTTTCGGTTGTGGCATCTAAGCCTTCGGTAGGTTCATCCAGCAACACCAGTGGCGCATCATGTAACAGCGCACGGGCGATAG > W3110S.gb/928056‑928167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |