Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 2,096,084 | G→A | E160E (GAG→GAA) | hisB → | fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 2,096,084 | 0 | G | A | 97.2% | 107.7 / ‑6.0 | 36 | E160E (GAG→GAA) | hisB | fused histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (27/8); minor base C (1/0); total (28/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCAACTCACCAGACGTGACCGTTACGCTCACGTAGT > W3110S.gb/2096038‑2096119 | gTTTACGCTACGCCCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1572317/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGACCAACTCACCAGACGTGAc > 1:1320248/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACa > 1:2999978/1‑49 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACGAGACGTGAc > 1:1413472/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:39995/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2401555/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2461209/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2976044/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:3010520/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:373294/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:385284/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1027593/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:402421/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:610742/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:639643/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:836678/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:879771/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:894762/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2255052/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1002320/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1331050/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1434053/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1486825/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1655985/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:1741674/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2096389/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2160703/1‑65 (MQ=255) gTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGAc > 1:2378752/1‑65 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:1822010/65‑1 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:2954696/65‑1 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:405386/65‑1 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:1357682/65‑1 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:2658624/65‑1 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:1305800/65‑1 (MQ=255) gAAACCCTGAACTGGCCAATGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:944757/65‑1 (MQ=255) aTGATTGGCGAACAACTCACCAGACGTGACCGTTACGCTCACGTAGt < 1:1235653/47‑1 (MQ=255) | GTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCAACTCACCAGACGTGACCGTTACGCTCACGTAGT > W3110S.gb/2096038‑2096119 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |