| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 5 (0.080) | 18 (0.330) | 15/110 | 0.7 | 79.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 5 (0.090) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547304‑4547442 | gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa < 1:3432120/71‑1 (MQ=255) aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaaa < 1:4145945/70‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt < 1:1606126‑M1/71‑5 (MQ=255) gagGTTTGATTTAACTTATTGATAATAAAGATAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttg < 1:1915226‑M1/71‑6 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc < 1:1104297/71‑1 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTc > 1:851621‑M1/54‑69 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa > 1:4186997‑M1/54‑71 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag < 1:720560‑M1/71‑14 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:1628347‑M1/70‑13 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag > 1:342420‑M1/1‑55 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:1112719‑M1/46‑55 (MQ=255) tttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:2436468‑M1/46‑55 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:2436473‑M1/27‑1 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataa < 1:2537050‑M1/26‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagca > 1:905232‑M1/1‑49 (MQ=255) ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc < 1:571743‑M1/69‑22 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa > 1:762167/1‑71 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:2227767‑M1/39‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:2748759‑M1/39‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggac > 1:1565095‑M1/1‑40 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac > 1:1409862‑M1/1‑37 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt < 1:4015603‑M1/70‑38 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt < 1:4354388‑M1/70‑38 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:3829310‑M1/47‑1 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:3794130‑M1/47‑1 (MQ=255) ttcccccaaaagatgatacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:889853‑M1/42‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAg < 1:2353461‑M1/31‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAg < 1:4265494‑M1/31‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:3126472‑M1/50‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:2825016‑M1/50‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:2442890‑M1/50‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta < 1:617071‑M1/71‑47 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:3295858‑M1/16‑71 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:2444696‑M1/16‑71 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:1057698‑M1/16‑71 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa < 1:4333720/71‑1 (MQ=255) aaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:3861625‑M1/14‑71 (MQ=255) aagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:4322287‑M1/58‑1 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgtt > 1:3047499‑M1/1‑19 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa > 1:4322175‑M1/7‑64 (MQ=255) aacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:1664415‑M1/6‑71 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctt > 1:3610990‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggctt > 1:1532991‑M1/1‑13 (MQ=255) catTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:3652236‑M1/68‑1 (MQ=255) cAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:713550‑M1/71‑60 (MQ=255) cAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:3350291‑M1/71‑60 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaata > 1:2544371‑M1/1‑10 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatatt > 1:4087356‑M1/1‑8 (MQ=255) tGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttttt > 1:951669‑M1/1‑8 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:3908414‑M1/54‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:1133101‑M1/70‑1 (MQ=255) gggCAAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattc < 1:4316927‑M1/70‑65 (MQ=255) gCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat > 1:4592839‑M1/1‑4 (MQ=255) gCCAttttgactcatagaagaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctat < 1:3586568‑M1/71‑68 (MQ=255) cAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa > 1:3898547‑M1/1‑2 (MQ=255) attttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgt < 1:2350507‑M1/71‑71 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:2970578‑M1/1‑71 (MQ=255) | GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547304‑4547442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |