| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 5 (0.080) | 24 (0.440) | 12/110 | 1.0 | 83.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 5 (0.090) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTG > W3110S.gb/4547610‑4547742 | ttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATg < 1:3652236‑M2/3‑1 (MQ=255) ttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGtt > 1:1664415‑M2/67‑71 (MQ=255) gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTc < 1:1956885/71‑1 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:3418495/1‑71 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGttt > 1:4322175‑M2/59‑64 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCttt > 1:3861625‑M2/59‑71 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtt < 1:4322287‑M2/12‑1 (MQ=255) tttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg > 1:3295858‑M2/57‑71 (MQ=255) tttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg > 1:1057698‑M2/57‑71 (MQ=255) tttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTg > 1:2444696‑M2/57‑71 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 1:1257162/1‑71 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:3126472‑M2/21‑1 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2825016‑M2/21‑1 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2442890‑M2/21‑1 (MQ=255) gagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:3829310‑M2/22‑1 (MQ=255) gagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:3794130‑M2/22‑1 (MQ=255) aaaatacgtaacttatttatgatatggacagtttggccccaaATGTATCATCTTTTGGGGGaa < 1:889853‑M2/21‑1 (MQ=255) atacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2748759‑M2/32‑1 (MQ=255) atacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2227767‑M2/32‑1 (MQ=255) cttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2353461‑M2/21‑1 (MQ=255) cttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:4265494‑M2/21‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:2436473‑M2/43‑1 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:2537050‑M2/43‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:1237169/69‑1 (MQ=255) tggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:4186997‑M2/19‑71 (MQ=255) gacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:851621‑M2/17‑69 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:4238262/1‑71 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:2436468‑M2/11‑55 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:1112719‑M2/11‑55 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:246964‑M2/65‑1 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:1470929‑M2/65‑1 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:1181763‑M2/65‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:1368637‑M2/65‑1 (MQ=255) | TTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTG > W3110S.gb/4547610‑4547742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |