Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 4,025,948 A→G I268T (ATC→ACC)  nikA ← nickel transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb4,025,9480AG100.0% 148.1 / NA 43I268T (ATC→ACC) nikAnickel transporter subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (22/21);  total (22/21)

CTTCACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGATCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAGCGGTAA  >  W3110S.gb/4025883‑4026015
                                                                 |                                                                   
cTTCACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGc                                                                <  1:1066748/71‑1 (MQ=255)
cTTCACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGc                                                                <  1:2242017/71‑1 (MQ=255)
cTTCACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGc                                                                <  1:675061/71‑1 (MQ=255)
   cACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCtgt                                                             >  1:4349196/1‑71 (MQ=255)
   cACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCtgt                                                             >  1:1615401/1‑71 (MQ=255)
   cACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCtg                                                              >  1:654470/1‑70 (MQ=255)
      gTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGAc                                                          <  1:2029475/71‑1 (MQ=255)
       tACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACa                                                         <  1:942831/71‑1 (MQ=255)
       tACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACa                                                         <  1:420493/71‑1 (MQ=255)
       tACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACa                                                         <  1:1905224/71‑1 (MQ=255)
             cAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTggg                                                   <  1:3843269/71‑1 (MQ=255)
             cAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTggg                                                   <  1:3659021/71‑1 (MQ=255)
              aGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGgt                                                  >  1:4657681/1‑71 (MQ=255)
                cTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGgtg                                                 >  1:3353777/1‑70 (MQ=255)
                   gTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGt                                             <  1:207580/71‑1 (MQ=255)
                   gTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGt                                             <  1:2608426/71‑1 (MQ=255)
                    ttGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCtgt                                                             <  1:584227/54‑1 (MQ=255)
                      ggtggGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAg                                          >  1:4545423/1‑71 (MQ=255)
                        tggGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCtgt                                                             <  1:1862647/50‑1 (MQ=255)
                                 tGGCGGTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCt                                 <  1:4336653/69‑1 (MQ=255)
                                      gTATTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTaaa                          <  1:348224/71‑1 (MQ=255)
                                        aTTGAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGc                        >  1:2876008/1‑71 (MQ=255)
                                           gAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCggg                     >  1:4167826/1‑71 (MQ=255)
                                           gAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCggg                     >  1:783264/1‑71 (MQ=255)
                                           gAGCGCCAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCgg                      >  1:1208286/1‑70 (MQ=255)
                                                 cAGCATCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAg                <  1:2027423/70‑1 (MQ=255)
                                                     aTCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTa             >  1:1063102/1‑69 (MQ=255)
                                                      tCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTaa                                           <  1:869348/38‑1 (MQ=255)
                                                      tCACGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGAt                                    <  1:917920/45‑1 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGAGAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:3039455/1‑71 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGc                                         >  1:3661107/1‑38 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGc                                         >  1:2697684/1‑38 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGc                                         >  1:1711566/1‑38 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTAt            >  1:3167294/1‑67 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:1748414/1‑71 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:1571695/1‑71 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:1600493/1‑71 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:1698006/1‑71 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:2552234/1‑71 (MQ=255)
                                                        aCGGTTTCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAg        >  1:2899486/1‑71 (MQ=255)
                                                            tttCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCg                   <  1:1046903/56‑1 (MQ=255)
                                                            tttCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAGCGGt    <  1:4207066/71‑1 (MQ=255)
                                                            tttCGGTCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAGCGGt    <  1:134339/71‑1 (MQ=255)
                                                              tcggtcggCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAgg               >  1:3245538/1‑58 (MQ=255)
                                                              tcggtcggCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAGCGGtaa  >  1:3819948/1‑71 (MQ=255)
                                                                 |                                                                   
CTTCACGTACTGCCAGCTCGTTGGTGGGGGCTTTGGCGGTATTGAGCGCCAGCATCACGGTTTCGATCGGCTGTGACAGTTGGGTGTGGTAAGCCGGATTCTGGCTAAAGCGGGCGAAGGTATCGAGCGGTAA  >  W3110S.gb/4025883‑4026015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: