| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,101,111 | G→A | S272L (TCG→TTG) | csgG ← | outer membrane lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,101,111 | 0 | G | A | 100.0% | 116.6 / NA | 39 | S272L (TCG→TTG) | csgG | outer membrane lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (10/29); total (10/29) | |||||||||||
CGCTTAAACAGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCGACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCAAATCCCACAGAC > W3110S.gb/1101045‑1101177 | cGCTTAAACAGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACa < 1:3656387/70‑1 (MQ=255) aCAGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCgg < 1:1235554/71‑1 (MQ=255) aCAGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCgg < 1:2221393/71‑1 (MQ=255) aGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTa < 1:565554/71‑1 (MQ=255) gTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACa < 1:2747273/60‑1 (MQ=255) gTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTAt < 1:1684267/71‑1 (MQ=255) aaaTGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTAttt > 1:571700/1‑70 (MQ=255) tGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACata > 1:520507/1‑56 (MQ=255) ccGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCgg < 1:2216309/60‑1 (MQ=255) ccGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAg < 1:1493727/71‑1 (MQ=255) gatgatAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAAt < 1:672966/71‑1 (MQ=255) tgatAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCgg < 1:2001979/55‑1 (MQ=255) tgatAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGt < 1:2920575/71‑1 (MQ=255) tgatAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGt < 1:3859757/71‑1 (MQ=255) tAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTAttt < 1:4267581/57‑1 (MQ=255) tAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTAttt < 1:1353177/57‑1 (MQ=255) tAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCAt < 1:2220065/71‑1 (MQ=255) tAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCAt < 1:3715873/71‑1 (MQ=255) aTTCCGGCTTTTTTATCTGTCAGGTTTCCGGTGGAACCAACATATGTCGGTATTTCACCAg < 1:3577586/61‑1 (MQ=255) ccGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTAt > 1:3009788/1‑50 (MQ=255) gCTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGt < 1:3987191/71‑1 (MQ=255) cTTTTTTATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAg < 1:4448585/54‑1 (MQ=255) ttttttATCTGTCAGGATTCCGGTTGAACCAACATATGGCGGTATTTCACCAg < 1:2726192/53‑1 (MQ=39) tttttATCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGaa > 1:926047/1‑54 (MQ=255) ttATCTGTCAGGATTCCGGTGGAACCAACATATGGCGCTATTTCACCAGAATGTCATTCTGCCGTTCTGCt > 1:569551/1‑71 (MQ=255) tCTGTCAGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCatt < 1:1999415/70‑1 (MQ=255) aGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTg > 1:3568613/1‑70 (MQ=255) aGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTg > 1:4468016/1‑70 (MQ=255) aGGATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTg > 1:1160957/1‑70 (MQ=255) ggATTCCGGTGGAACCAACATATTGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCa < 1:2874916/71‑1 (MQ=255) ggATTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCa < 1:2461501/71‑1 (MQ=255) aTTCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCaaa > 1:4535104/1‑71 (MQ=255) ttCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGt < 1:4217345/41‑1 (MQ=255) ttCCGGTGGAACCAACATATGGCGGTATTTCACCAGAATGt < 1:4313196/41‑1 (MQ=255) ccGGTGGAACCAACATATGGCGGTATTTCACCAGAATGTCAt > 1:343071/1‑42 (MQ=255) gTGGAACCAACATATGGCGGTATTTCACCAGAATGTCa < 1:1560350/38‑1 (MQ=255) tGGAACCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCa < 1:2224550/62‑1 (MQ=255) ggAACCAACATATGGCGGTATTTCACCAGAATGTCAt < 1:3489907/37‑1 (MQ=255) aaCCAACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCAAATCCCACAGAc < 1:547276/71‑1 (MQ=255) | CGCTTAAACAGTAAAATGCCGGATGATAATTCCGGCTTTTTTATCTGTCAGGATTCCGGTGGAACCGACATATGGCGGTATTTCACCAGAATGTCATTCTGCCGTTCTGCTTTATTTTGCAAATCCCACAGAC > W3110S.gb/1101045‑1101177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |